View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1639_low_8 (Length: 439)
Name: NF1639_low_8
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 17724171 - 17723750
Alignment:
| Q |
1 |
atgaaagtgagtccaatgatagtatcagtcaccccttaacatatggaaaaaggataaggggaaatgtgagggttagaagaatggtatgattcaatataac |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17724171 |
atgaaagtaagtccaatgatagtatcagtcaccccttaacatatggaaaaaggataaggggaaatgtgagggttagaagaatggtatgattcaatataac |
17724072 |
T |
|
| Q |
101 |
accgttagtgaagatgaatgactccagttctattgaggttggccaattgaatttaagtcatatggaaagagagatggatcatcatgcacggctatgtact |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17724071 |
accgttagtgaagatgaatgactccggttctattgaggttggccaattgaatttaagtcatatggaaagagagatggatcatcatgcacggctatgtgct |
17723972 |
T |
|
| Q |
201 |
gcggaaagtgcagtttgttctgtccttctgatgcatttagatgatgctgacgaaaagcgatgacgatgtagctgaccatatctcaacaactgaagatttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17723971 |
gcggaaagtgcagtttgttctgtccttatgattcatttagatgatgctgacgaaaagcgatgatgatgtagctgaccatatctcaacaactgaatatttt |
17723872 |
T |
|
| Q |
301 |
gtaaattctcacagaatggtaattgtagtgttcctgtaaagattgtatagatttcattagaatactttgcaaaaatttcagtccgacttaattatttata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
17723871 |
gtaaattctcacagaatggtaattgtagtgttcctgcaaagattgtatagatttcattagaatactttgcaaaaaattcagcccgacttaattatttata |
17723772 |
T |
|
| Q |
401 |
ttcattttgtgatgcctcactt |
422 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
17723771 |
ttcattttgtgatgcctcactt |
17723750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 19025400 - 19024979
Alignment:
| Q |
1 |
atgaaagtgagtccaatgatagtatcagtcaccccttaacatatggaaaaaggataaggggaaatgtgagggttagaagaatggtatgattcaatataac |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19025400 |
atgaaagtaagtccaatgatagtatcagtcaccccttaacatatggaaaaaggataaggggaaatgtgagggttagaagaatggtatgattcaatataac |
19025301 |
T |
|
| Q |
101 |
accgttagtgaagatgaatgactccagttctattgaggttggccaattgaatttaagtcatatggaaagagagatggatcatcatgcacggctatgtact |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19025300 |
accgttagtgaagatgaatgactccggttctattgaggttggccaattgaatttaagtcatatggaaagagagatggatcatcatgcacggctatgtgct |
19025201 |
T |
|
| Q |
201 |
gcggaaagtgcagtttgttctgtccttctgatgcatttagatgatgctgacgaaaagcgatgacgatgtagctgaccatatctcaacaactgaagatttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19025200 |
gcggaaagtgcagtttgttctgtccttatgattcatttagatgatgctgacgaaaagcgatgatgatgtagctgaccatatctcaacaactgaatatttt |
19025101 |
T |
|
| Q |
301 |
gtaaattctcacagaatggtaattgtagtgttcctgtaaagattgtatagatttcattagaatactttgcaaaaatttcagtccgacttaattatttata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
19025100 |
gtaaattctcacagaatggtaattgtagtgttcctgcaaagattgtatagatttcattagaatactttgcaaaaaattcagcccgacttaattatttata |
19025001 |
T |
|
| Q |
401 |
ttcattttgtgatgcctcactt |
422 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
19025000 |
ttcattttgtgatgcctcactt |
19024979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 130 - 225
Target Start/End: Original strand, 19329806 - 19329901
Alignment:
| Q |
130 |
ctattgaggttggccaattgaatttaagtcatatggaaagagagatggatcatcatgcacggctatgtactgcggaaagtgcagtttgttctgtcc |
225 |
Q |
| |
|
||||||| |||||||||||| || ||||||||||||| ||||||||||| ||||||||| ||||||| | |||||||||||| ||||||||| |
|
|
| T |
19329806 |
ctattgatgttggccaattgcatctaagtcatatggatagagagatggacaatcatgcacaattatgtaccgtagaaagtgcagttagttctgtcc |
19329901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University