View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1639_low_9 (Length: 426)
Name: NF1639_low_9
Description: NF1639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1639_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 40059766 - 40060190
Alignment:
| Q |
1 |
ttttctggggtgttcatctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40059766 |
ttttctggggtgttcatctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattccggggattaagttccgaactgataat |
40059865 |
T |
|
| Q |
101 |
gaaccatttaaggtagaggtaaccataactctgttgctccctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40059866 |
gaaccatttaaggtagaggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaatg |
40059965 |
T |
|
| Q |
201 |
aagagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcaggnnnnnnnatcactaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40059966 |
aagagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcaggtttttttatcactaa |
40060065 |
T |
|
| Q |
301 |
atacaagtattgcgagtatatttttgtaga-----------taaagtttatatttgttaatgtgagagtatttgtgctttctattgccagattgaaaatg |
389 |
Q |
| |
|
|||||| ||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40060066 |
atacaattatagcgagtatatttttgtagacatattaaggtcaaagttaatatttgttaatgtgagagtatttgtgc--tctattgccagattgaaaatg |
40060163 |
T |
|
| Q |
390 |
agtatggagacatcgattcagcctatg |
416 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
40060164 |
agtatggagacatcgattcagcctatg |
40060190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 40077844 - 40078129
Alignment:
| Q |
1 |
ttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgata |
98 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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|
| T |
40077844 |
ttttctgtggtgttcatgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgaca |
40077943 |
T |
|
| Q |
99 |
atgaaccatttaaggtagaggtaaccataactctgttgctccctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaa |
198 |
Q |
| |
|
|||||||||||||||||| | ||||| | || |||||||| | | | |||||||||||||||||||||||||| || |||| |||||||||||||||||| |
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| T |
40077944 |
atgaaccatttaaggtag-gctaaccttcaccctgttgcttcatgcatttgtccttaaatctgagttcacttgacaggaaactttgtcttcaggccgaaa |
40078042 |
T |
|
| Q |
199 |
tgaagagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcagg |
285 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40078043 |
tgaagcgattcaccgctaagattgtcgatctcatgaagcaagagaaactgtatgcatcacaaggaggacctataattttatctcagg |
40078129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 40085667 - 40086078
Alignment:
| Q |
17 |
tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtag |
116 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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|
| T |
40085667 |
tctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactgacaatgaaccatttaaggta- |
40085765 |
T |
|
| Q |
117 |
aggtaaccataactctgttgctccctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccgaaatgaagagattcaccgcta |
216 |
Q |
| |
|
|| ||||| | | || |||| | | ||||||||||| | ||||||||||||| || |||| |||||||||||| ||||||||| |||||||| ||| |
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| T |
40085766 |
agttaaccttcagtccagtgcttcatgcttttgtccttgga-ctgagttcacttgacaggaaactttgtcttcaggttgaaatgaagcgattcaccacta |
40085864 |
T |
|
| Q |
217 |
agattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcaggnnnnnnnatcacta-----aatacaagtatt |
311 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| |
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|
| T |
40085865 |
agattgtcgacctcatgaagcaagagaaactgtatgcatcacaaggaggacctataattttatctcaggtttttttatcatgaaatacaatacaagtata |
40085964 |
T |
|
| Q |
312 |
gcgagtatatttttgtagat---------aaagtttatatttgttaatgtgagagtatttgtgctttctattgccagattgaaaatgagtatggagacat |
402 |
Q |
| |
|
| | |||||| ||| |||| ||||||||||||||||||||||||||| |||||| |||||| || ||||| |||||||||||||||||||| |
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| T |
40085965 |
gttaatatattcttgaagatattaaggtcaaagtttatatttgttaatgtgagagtgtttgtgatttctaatgacagatagaaaatgagtatggagacat |
40086064 |
T |
|
| Q |
403 |
cgattcagcctatg |
416 |
Q |
| |
|
|||||||||||||| |
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|
| T |
40086065 |
cgattcagcctatg |
40086078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 339 - 402
Target Start/End: Original strand, 40078205 - 40078268
Alignment:
| Q |
339 |
atatttgttaatgtgagagtatttgtgctttctattgccagattgaaaatgagtatggagacat |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
40078205 |
atatttgttaatgtgagagtatttgtgctttctaatgccagattgaaaatgagtatggaaacat |
40078268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 35052758 - 35052652
Alignment:
| Q |
17 |
tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtag |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||| ||| || |||||||||||||||||| |
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|
| T |
35052758 |
tctaattgagggctttaacttcttaacagtggttaacctctttggattcacttcattccagggattaggttccaaacagacaatgaaccatttaaggta- |
35052660 |
T |
|
| Q |
117 |
aggtaacc |
124 |
Q |
| |
|
|||||||| |
|
|
| T |
35052659 |
aggtaacc |
35052652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 210 - 285
Target Start/End: Complemental strand, 22015654 - 22015579
Alignment:
| Q |
210 |
accgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcagg |
285 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22015654 |
accgctaagattgtcgatatgatgaagcaagagaacctctatgcatcacaaggaggacctataattttatctcagg |
22015579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 22015744 - 22015667
Alignment:
| Q |
41 |
aacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtagag |
118 |
Q |
| |
|
|||||||||||||| |||||| | || || ||| | || ||||||||||||||| ||||||||||||| |||| |||| |
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|
| T |
22015744 |
aacagtggtttccccctttggttgcattttattgctggaattaagttccgaactaataatgaaccattcaaggcagag |
22015667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 12735558 - 12735460
Alignment:
| Q |
17 |
tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggta |
115 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||| || || |||||||||||||||||| |
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|
| T |
12735558 |
tctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatagacaatgaaccatttaaggta |
12735460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 12798385 - 12798287
Alignment:
| Q |
17 |
tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggta |
115 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||| || || |||||||||||||||||| |
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|
| T |
12798385 |
tctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatagacaatgaaccatttaaggta |
12798287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 53322738 - 53322862
Alignment:
| Q |
1 |
ttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgata |
98 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||||||| | ||||| |||||||| ||||||||||||| ||||||||||||| || || | |
|
|
| T |
53322738 |
ttttctggggtcttcatttctaattgagggctttaacttcttaagattggttaacctctttgtattcacttcattccagggattaagttccaaatcgaca |
53322837 |
T |
|
| Q |
99 |
atgaaccatttaaggtagaggtaacc |
124 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
53322838 |
atgaaccatttaaggta-aggtaacc |
53322862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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