View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1640-INSERTION-1 (Length: 784)
Name: NF1640-INSERTION-1
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640-INSERTION-1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 722; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 9 - 784
Target Start/End: Original strand, 46466496 - 46467270
Alignment:
| Q |
9 |
tcttcaatgccctctaacgaattcattcgcagtgttactcttcgttttctttgccgtatcaatgaatctgaaatccttga----ttaatcccttcgattc |
104 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46466496 |
tcttcaatgccct--aacgaattcattcgcagtgttactcttcgttttctttgccgtatcaatgaatctgaaatccttgaaccgttaatcccttcgattc |
46466593 |
T |
|
| Q |
105 |
tgtcaaatcttgaacactgtcatactttagttcgtggtaacgccgttttggcagttacgtctgtttataacctttctcaggggaaagagttactcgataa |
204 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46466594 |
tgtcaaatcttgaacacggtcatgctttagttcgtggtaacgccgttttggcagttacgtctgtttataacctttctcaggggaaagagttactcgataa |
46466693 |
T |
|
| Q |
205 |
cgcgccggagattgttgagaagtttcttgaatctgaacaggattcgtcgtgtaagcgtaatgcttttcttatgctgatttcttgtgctcaggatcgtgca |
304 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46466694 |
cgcgccggagattgttgagaagtttcttgaatctgaacaggattcgtcgtgtaagcgtaatgcttttcttatgctgatttcttgtgctcaggatcgtgca |
46466793 |
T |
|
| Q |
305 |
atcaaatatctttttaggaatattgataggattcttgattggagtgaacagcttcaaatgcttgttttggaattgattaagaaagtttctgtgaataaca |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46466794 |
atcaaatatctttttaggaatattgataggattcttgattggagtgaacagcttcaaatgcttgttttggaattgattaagaaagtttctgtgaataaca |
46466893 |
T |
|
| Q |
405 |
ataagggtgaaaaggcaaaatatatcgcgattgttaagtatttgttgagtgcaagttctaatgatgttgtttatgaatgtgctggtgcacttgtttcact |
504 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46466894 |
ataagggtgaaaaggcaaaatatatcgcgattgttaagtatttgttgagtgcaagttctaatgctgttgtttatgaatgtgctggtgcacttgtttcact |
46466993 |
T |
|
| Q |
505 |
tagttctgcacctactgcaattgaagctgctgctagtgcttattgtaagttgttgatttctcatagtgataacaatgtgaaacttattgtgcttgatcgt |
604 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46466994 |
ta---ctgcacctactgcaattgaagctgctgctagtgcttattgtaagttgttgatttctcatagtgataacaatgtgaaacttattgtgcttgatcgt |
46467090 |
T |
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| Q |
605 |
cttaacgagcttaagaggtataatagggagattatggttgatatggttatggacgtgcttagggcacttttgactcctaatcatggatgtgtttaagcac |
704 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46467091 |
cttaacgagcttaagaggtataatagggagattatggttgatatggttatggatgtgcttagggcacttttgactcctaatcatggatgtgtttaagcac |
46467190 |
T |
|
| Q |
705 |
cttgacttgcaactttaagtcaaaatctctttctccctcccaaactctcattgctattttctcacttgatcacttttatt |
784 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46467191 |
cttgacttgcaactttaagtcaaaatctctttctccctcccaaactctcattgctattttctcacttgatcacttttatt |
46467270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 3e-93; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 158 - 689
Target Start/End: Original strand, 1471561 - 1472089
Alignment:
| Q |
158 |
gttacgtctgtttataacctttctcaggggaaagagttactcgataacgcgccggagattgttgagaagtttcttgaatctgaacaggattcgtcgtgta |
257 |
Q |
| |
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|||| |||||||||||| ||| |||| ||| || ||||||| ||| || || |||||||||||||| ||||||| || || || ||| | ||| ||| |
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| T |
1471561 |
gttatgtctgtttataagcttcctcaaggggaacagttacttgattctgctcctgagattgttgagaaatttcttgtttcggagcaagatgcttcgagta |
1471660 |
T |
|
| Q |
258 |
agcgtaatgcttttcttatgctgatttcttgtgctcaggatcgtgcaatcaaatatctttttaggaatattgataggattcttgattggagtgaacagct |
357 |
Q |
| |
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|| | || || ||| | |||||| |||| |||||||| |||||||| | || |||||||||| ||||||||||||||| |||||||| | |||||| | |
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| T |
1471661 |
agaggaacgcgtttttaatgctgttttcgtgtgctcaagatcgtgctgtgaattatctttttacaaatattgataggattattgattggggggaacagtt |
1471760 |
T |
|
| Q |
358 |
tcaaatgcttgttttggaattgattaagaaagtttctgtgaataacaataagggtgaaaaggcaaaatatatcgcgattgttaagtatttgttgagtgca |
457 |
Q |
| |
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|||||| | || |||||||||||||||||||||| | |||||| |||||| || || | |||||||| |||| ||| | |||||||||||| |
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| T |
1471761 |
acaaatggtggtgttggaattgattaagaaagtttgtaggaataa---taagggggagaaagggaaatatattaagattattatttctttgttgagtgct |
1471857 |
T |
|
| Q |
458 |
agttctaatgatgttgtttatgaatgtgctggtgcacttgtttcacttagttctgcacctactgcaattgaagctgctgctagtgcttattgtaagttgt |
557 |
Q |
| |
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| ||||| || |||||||||||||||||||||| | |||||||| |||||||||||||| || || ||| |||| ||||| | | |||||||| |||| | |
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| T |
1471858 |
aattctactgctgttgtttatgaatgtgctggtacgcttgtttcgcttagttctgcaccaaccgcgattaaagcggctgcgaatacttattgtcagttat |
1471957 |
T |
|
| Q |
558 |
tgatttctcatagtgataacaatgtgaaacttattgtgcttgatcgtcttaacgagcttaagaggtataatagggagattatggttgatatggttatgga |
657 |
Q |
| |
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|| ||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1471958 |
tgctttctcagagtgataacaatgtgaagcttattgtgcttgatcggcttaacgagcttaagagggataatagggagattatggttgatatggttatgga |
1472057 |
T |
|
| Q |
658 |
cgtgcttagggcacttttgactcctaatcatg |
689 |
Q |
| |
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||||||||||| | | |||||||||||||| |
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| T |
1472058 |
tgtgcttagggcgttatcgactcctaatcatg |
1472089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 203 - 319
Target Start/End: Complemental strand, 55203117 - 55203001
Alignment:
| Q |
203 |
aacgcgccggagattgttgagaagtttcttgaatctgaacaggattcgtcgtgtaagcgtaatgcttttcttatgctgatttcttgtgctcaggatcgtg |
302 |
Q |
| |
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||||| || ||||| |||||||||||||| ||| ||||||| ||| | || |||||||||| |||||||||||||| | ||||||||||||||||||||| |
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| T |
55203117 |
aacgcacctgagatcgttgagaagtttctcgaagctgaacaagatccttcatgtaagcgtattgcttttcttatgccgttttcttgtgctcaggatcgtg |
55203018 |
T |
|
| Q |
303 |
caatcaaatatcttttt |
319 |
Q |
| |
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| T |
55203017 |
ctatcaaatatcttttt |
55203001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 625 - 669
Target Start/End: Complemental strand, 55202717 - 55202673
Alignment:
| Q |
625 |
taatagggagattatggttgatatggttatggacgtgcttagggc |
669 |
Q |
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| T |
55202717 |
taatagggaaattatggttgatatggttatggatgtgcttagggc |
55202673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 392
Target Start/End: Complemental strand, 55202963 - 55202920
Alignment:
| Q |
349 |
tgaacagcttcaaatgcttgttttggaattgattaagaaagttt |
392 |
Q |
| |
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|||||| ||||||||| ||||||||||| ||||||||||||||| |
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| T |
55202963 |
tgaacaacttcaaatgattgttttggaagtgattaagaaagttt |
55202920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 55203269 - 55203216
Alignment:
| Q |
22 |
ctaacgaattcattcgcagtgttactcttcgttttctttgccgtatcaatgaat |
75 |
Q |
| |
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||||||||||||| ||| |||| ||||| ||||||||| |||| |||||||||| |
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| T |
55203269 |
ctaacgaattcatgcgcggtgtaactctccgttttcttagccgcatcaatgaat |
55203216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 18106668 - 18106757
Alignment:
| Q |
210 |
cggagattgttgagaagtttcttgaatctgaacaggattcgtcgtgtaagcgtaatgcttttcttatgctgatttcttgtgctcaggatc |
299 |
Q |
| |
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||||||| ||||||||||||| | |||| |||| ||| | || |||||||||||||||||| |||||||| |||| ||||||| ||||| |
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| T |
18106668 |
cggagatcattgagaagtttctcgtatctcaacaagatccttcatgtaagcgtaatgctttttttatgctgttttcgtgtgctcgggatc |
18106757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 22853698 - 22853781
Alignment:
| Q |
219 |
ttgagaagtttcttgaatctgaacaggattcgtcgtgtaagcgtaatgcttttcttatgctgatttcttgtgctcaggatcgtg |
302 |
Q |
| |
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||||||||||||| |||||| |||| ||| | || |||||||| ||||||||| |||||| | ||| ||||||| |||||||| |
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| T |
22853698 |
ttgagaagtttctcgaatctcaacaagatccttcatgtaagcgcaatgctttttttatgccgtttttgtgtgctcgggatcgtg |
22853781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 702 - 768
Target Start/End: Complemental strand, 187268 - 187202
Alignment:
| Q |
702 |
caccttgacttgcaactttaagtcaaaatctctttctccctcccaaactctcattgctattttctca |
768 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||||||| ||||| |||||| ||||||||| |
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| T |
187268 |
caccttgacttgcaacttacagtcaaaaactctttctccctctcaaacgtgcattgcaattttctca |
187202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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