View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1640-INSERTION-3 (Length: 504)
Name: NF1640-INSERTION-3
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640-INSERTION-3 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 462
Target Start/End: Original strand, 13116648 - 13117100
Alignment:
| Q |
10 |
caaggcatctaaaactttagctcttccaagctagcttgctaacaatggcatcattgatgcaattgctgcgcatccttgatgaggatcatgtggaagaacc |
109 |
Q |
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| T |
13116648 |
caaggcatctaaaacttgagcccttccaagctaactagttaacaatggcatcattgatgcaattgctgaacctccttgatgaggatcatgtggaagaacc |
13116747 |
T |
|
| Q |
110 |
acaacctcgacaaccacgacgacgcaaccgcaatggttccaatgccgttgctcgtcgccaaaagccacctcccgacactttctccaacgggggcacccaa |
209 |
Q |
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| T |
13116748 |
acaacctcgacaaccacgacgacgcaaccgcaatggttccagtgccgttgctcgtcgccaaaagccacctcccgacactttctccaacgggggcacccaa |
13116847 |
T |
|
| Q |
210 |
aacatggagggtcttattaacaacaccggttatgttcatggaaatggcaacggaagcatcatctttggtggctttgattcctctacaatgaattttgatt |
309 |
Q |
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| T |
13116848 |
aacatggagggtcttattaacaacaccggttatgttcatggaaatggcaacggaagcatcatctttggtggctttgattcctctacaatgaattttgatt |
13116947 |
T |
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| Q |
310 |
aatttgttgtataagtgattcttcttattatcacatattgcactatataatacgtgttatatactattgaaagaacttgagcaatatgactcttgtatga |
409 |
Q |
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| T |
13116948 |
aatttgttgtataagtggttcttcctattatcacatattgcactatataatacgtcttatatactattgtaagaacttgagcaatatgactcttgtatga |
13117047 |
T |
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| Q |
410 |
tgattgtattatattttttgtctctaatgtgagaactaattttgctgagcaaa |
462 |
Q |
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| T |
13117048 |
taattgtattatattttttgtctctaatgtgagaactaatgttgctgagcaaa |
13117100 |
T |
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