View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1640-INSERTION-6 (Length: 378)
Name: NF1640-INSERTION-6
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640-INSERTION-6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 3115258 - 3114888
Alignment:
| Q |
8 |
attggtgcagttggaattccagtagaaaaattatgtgatggtacaaaagttgaaggcttttttcccattctcaatactaatggaaaaccctttaagactg |
107 |
Q |
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| T |
3115258 |
attggtgcagttggaattccagtagaaaaattatgtgatggtacaaaagttgaaggcttttttcccattctcaatactaatggaaaaccctttaagactg |
3115159 |
T |
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| Q |
108 |
aaacaattttgagcttgtcaattcagtatacacctgttgataaggtagccctttatagcaatggtgttggtggtgattttcaaggtgttcctgctacata |
207 |
Q |
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| T |
3115158 |
aagcaattttgagcttgtcaattcagtatacacctgttgataaggtagccctttatagcaatggtgttggtggtgattttcaaggtgttcctgctacata |
3115059 |
T |
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| Q |
208 |
ctttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgttccacaaggttgtcttcctagtttgagggttgatggtggtgatcatgat |
307 |
Q |
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| T |
3115058 |
ctttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgttccacaaggttgtcttcctagtttgagggttgatggtggtgatcatgat |
3114959 |
T |
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| Q |
308 |
ttgagttatgacagtggaaattgttggcatgatatctttgatgcaataagtcaggcgcgacgattggtata |
378 |
Q |
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| T |
3114958 |
ttgagttatgagagtggaaattgttggcatgatatctttgatgcaataagtcaggcgcgacgattggtata |
3114888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 375
Target Start/End: Complemental strand, 3121114 - 3120747
Alignment:
| Q |
8 |
attggtgcagttggaattccagtagaaaaattatgtgatggtacaaaagttgaaggcttttttcccattctcaatactaatggaaaaccctttaagactg |
107 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| | |
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| T |
3121114 |
attggtgcagttggaattccagttgaaaagttatgtgatggtgcaaaagttgaaggctttttccccattcttaatactaatggaaaacccttcaagaccg |
3121015 |
T |
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| Q |
108 |
aaacaattttgagcttgtcaattcagtatacacctgttgataaggtagccctttatagcaatggtgttggtggtgattttcaaggtgttcctgctacata |
207 |
Q |
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|||| |||||||||| |||||||||||||| ||| |||||||| || | ||||||||||||||||||||| ||||| |||||| |||||||||||||| |
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| T |
3121014 |
aaaccgttttgagcttatcaattcagtatactcctattgataagataacgctttatagcaatggtgttggttctgattatcaaggcgttcctgctacata |
3120915 |
T |
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| Q |
208 |
ctttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgttccacaaggttgtcttcctagtttgagggttgatggtggtgatcatgat |
307 |
Q |
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| T |
3120914 |
ttttccacttagaaaaggtggaaaagttacactttatcaagatgctcatgttccacaaggttgtcttcctggtttgagggttgatggtggtgatcatgat |
3120815 |
T |
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| Q |
308 |
ttgagttatgacagtggaaattgttggcatgatatctttgatgcaataagtcaggcgcgacgattggt |
375 |
Q |
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| T |
3120814 |
gttatttatgagagtggaaattgttggcaagatatctttgatgcaataagtcaggctcgtcgattggt |
3120747 |
T |
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