View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1640-INSERTION-7 (Length: 391)
Name: NF1640-INSERTION-7
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640-INSERTION-7 |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 7 - 391
Target Start/End: Original strand, 26829434 - 26829815
Alignment:
| Q |
7 |
accaatcaaatacgctactaagaataagataacgtattatctaggcttaatgtcacaaacctgcatgtcctaaatcaataaacaataaaattgagagccg |
106 |
Q |
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| T |
26829434 |
accaatcaaata-gctactaagaataagataacgtattatctaggcttaatgtcacacacctgcatgtcctaaatcaataaacaataaaattgagagccg |
26829532 |
T |
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| Q |
107 |
tttgttgtattggcagccctaaatcaatttgtatggtgggaaatnnnnnnnnnnnnncttattacatgggttggtgataattagtaaaaaagttgaatat |
206 |
Q |
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| T |
26829533 |
tttgttgtattggcagccctaaatcaatttgtatggtgggaaattatatatatat--cttattacatgggttggtgataattagtaaaaaagttgaatat |
26829630 |
T |
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| Q |
207 |
tcaaccaggtacaaaattctctttagtatattcaaaatgctgaatgagaatatttagttacggtattgtagttgcaccaactatatttgcatgctttttg |
306 |
Q |
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| T |
26829631 |
tcaaccaggtacaaaattctctttagtatattcaaaatgctgaatgagaatatttagttacggtattgtagttgcaccaactatatttgcatgctttttg |
26829730 |
T |
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| Q |
307 |
ctgtaatattaaggttttggtcaatttaaaatcaactacgtaaccgtgactgctgccacaatttagaacaatggggagacttacc |
391 |
Q |
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| T |
26829731 |
ctgtaatattaaggttttggtcaatttaaaatcaactacgtaaccgtgactgctgccacaatttagaacaatggggagacttacc |
26829815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 263 - 391
Target Start/End: Original strand, 45412961 - 45413089
Alignment:
| Q |
263 |
gttacggtattgtagttgcaccaactatatttgcatgctttttgctgtaatattaaggttttggtcaatttaaaatcaactacgtaaccgtgactgctgc |
362 |
Q |
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| T |
45412961 |
gttacggtattatagttgcaccaactatatttgcatgctttttgctgtaatattaaggttttggtcaatataaaatcaactaagtaacccagactgctgc |
45413060 |
T |
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| Q |
363 |
cacaatttagaacaatggggagacttacc |
391 |
Q |
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| T |
45413061 |
cacaatttagaacaatggggagacttacc |
45413089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 85 - 261
Target Start/End: Original strand, 45412454 - 45412628
Alignment:
| Q |
85 |
taaacaataaaattgagagccgtttgttgtattggcagccctaaatcaatttgtatggtgggaaatnnnnnnnnnnnnncttattacatgggttggtgat |
184 |
Q |
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| T |
45412454 |
taaacaataaaattaagagccgtttgttgtattggcagccctaaatcaatttgtatggtgggacattatatatat----cttattacatgggttggtgat |
45412549 |
T |
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| Q |
185 |
--aattagtaaaaaagttgaatattcaaccaggtacaaaattctctttagtatattcaaaatgctgaatgagaatattt |
261 |
Q |
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| T |
45412550 |
ggaattagtaaaaaagttgaatattcagccaggtacaaaattctcttttgtatattcaaaatgctgaatgagagtattt |
45412628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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