View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1640-INSERTION-9 (Length: 513)
Name: NF1640-INSERTION-9
Description: NF1640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1640-INSERTION-9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 8 - 513
Target Start/End: Complemental strand, 31667177 - 31666673
Alignment:
| Q |
8 |
cattcaattgccaacctaaaatctctttccatctatgcagtgcgtttacatgatcatgatctctcccgtgaagcaacgttccagtcgaagccttggatat |
107 |
Q |
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| T |
31667177 |
cattcaattgccaacctaaaatctctttccatctatgcagtatgtttacatgatcatgatctctcccgtgaagcaacgttccagtcgaagccttggatat |
31667078 |
T |
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| Q |
108 |
aacagaatacatagcatcaagaagaaaatacgtatgaagaacaaaatactccatcaataaattcgacgccatctcactagcttctgcaccattatgaccg |
207 |
Q |
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| T |
31667077 |
aacagaatacatagcatcaagaagaaaataagtatgaagaacaaaatactccatcaataaattcgacgccatctcactagcttctgcaccattatgaccg |
31666978 |
T |
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| Q |
208 |
tcaaaaaccgccacaatcccaaccacaacctctttaatccccattgcacctaatcaaacatcaaacacatagaattataacttactctcgcaaacaaaac |
307 |
Q |
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| T |
31666977 |
tcaaaaaccgccacaatcccaaccacgacctctttaattcccattgcacctaatcaaacatcaaacacatagaattataacttactctcgcaaacaaaac |
31666878 |
T |
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| Q |
308 |
ttaactaactatgtaactgattattgtaagttgcaactaactattatgaaagttaactaattactgtaactaattattgcaactaactcttccgatgaaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31666877 |
ttaactaactatgtaactgattattgtaagttgcaactaactattatgaaagttaactaattactgtaactaattattgcaactaactcttccgatgaaa |
31666778 |
T |
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| Q |
408 |
cttaactataactgattattgtaattaactatttacgtctaataaatggtttaccgggaaatggaatgcgaagatcgaggacgcaaagagtgcgatcctc |
507 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31666777 |
cttaactataactgattattgtaattaacta-ttacgtctaataaatggtttaccgggaaatggaatgcgaagatcgaggacgcagagagtgcgatcctc |
31666679 |
T |
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| Q |
508 |
ttgaga |
513 |
Q |
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|||||| |
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| T |
31666678 |
ttgaga |
31666673 |
T |
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