View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16400_high_1 (Length: 447)
Name: NF16400_high_1
Description: NF16400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16400_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 12 - 429
Target Start/End: Complemental strand, 1411465 - 1411049
Alignment:
| Q |
12 |
atcatcaactgcttacaaaatgtgggaaacagttacaaacactaagagtaacattttgctattgggtaaataggaaatatataattttcattatcaaaag |
111 |
Q |
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| T |
1411465 |
atcatcaactgcttacaaaatgtgggaaacagttacaaacactaagagtaacattttgctattgggtaaataggaaatatataattttcattatcaaaag |
1411366 |
T |
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| Q |
112 |
tcattattaatttgttatgttgctagtctcccctctctaacaaaggagtttattttcttagtttctttccaactccaaaaagtactatagtttagatgga |
211 |
Q |
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| T |
1411365 |
tcattattaatttgttatgttgctagtctcccctctctaacaa-ggagtttattttcttagtttatttccaactccaaaaagtactatagtttagatgaa |
1411267 |
T |
|
| Q |
212 |
taatagttgttaaatgattatgaatcatgtttattccttgacaagtttgtatagaaattcttcctcagatttaatttcgcatccattttagttttaaata |
311 |
Q |
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| T |
1411266 |
taatagttgttaaatgattatgaatcatgtttattccttgacaagtttgtatagaaattcttcctcagatttaatttcgcatccattttaattttaaata |
1411167 |
T |
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| Q |
312 |
accaatacacaaatgataaatgctaggtcattaattaagcatgtggtcagaagttcaatctcatgtcactttaaattaataaataaatggttgaagagat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
1411166 |
accaatacacaaatgataaatgctaggtcattaattaagcacgtggtcagaagtttaatctcatgtcactttaaattaataaataaatgatagaagagat |
1411067 |
T |
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| Q |
412 |
caatccttacaatagatc |
429 |
Q |
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| T |
1411066 |
caatccttacaatagatc |
1411049 |
T |
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