View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16400_high_2 (Length: 306)
Name: NF16400_high_2
Description: NF16400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16400_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 39490603 - 39490880
Alignment:
| Q |
18 |
acctcatcaccaacctaaccaaaaatgaaacattttcatgtgcaattgtcaatccatttgttccttgggctattgatgttgttgctgaacatgaaatccc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39490603 |
acctcatcaccaacctaaccaaaaatgaaacattttcatgtgcaattgtcaatccatttgttccttgggctattgatgttgttgctgaacatgaaatccc |
39490702 |
T |
|
| Q |
118 |
ttgtgcattgctttggatacaagcctctgctttgtattcaatttactatcattacttcaacaacactgattcttttcccagtttggaggatctaaatgag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39490703 |
ttgtgcattgctttggatacaagcctctgctttgtattcaatttactatcattacttcaacgtcactgattcttttcccagtttggaggatctaaatgag |
39490802 |
T |
|
| Q |
218 |
aaagtgcaattacctgggctaccaatattagaggtaagagatcttccatcaatgatacttccttctagtcctcttcat |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39490803 |
aaagtgcaattacctgggctaccaatattagaggtaagagatcttccttcaatgatacttccttctagtcctcttcat |
39490880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 39288430 - 39288155
Alignment:
| Q |
20 |
ctcatcaccaacctaaccaaaaatgaaacattttcatgtgcaattgtcaatccatttgttccttgggctattgatgttgttgctgaacatgaaatccctt |
119 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39288430 |
ctcattaccaacctaacaaaaaatgaaacattttcatgtgcaattgtcaatccatttgttccttgggccattgatgttgttgctgaacatgaaatccctt |
39288331 |
T |
|
| Q |
120 |
gtgcattgctttggatacaagcctctgctttgtattcaatttactatcattacttcaacaacactgattcttttcccagtttggaggatctaaatgagaa |
219 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||| | ||||||||| |||| || | ||||||| ||||| | || |||||||| |
|
|
| T |
39288330 |
gtgcattgctttggatacaagcctccactttgtactcaatttactaccgttacttcaaaaacaacgacttgtttcccaagttggatgttcctaatgagaa |
39288231 |
T |
|
| Q |
220 |
agtgcaattacctgggctaccaatattagaggtaagagatcttccatcaatgatacttccttctagtcctcttcat |
295 |
Q |
| |
|
||||||||||||||| ||||| | |||||||||| ||||||||| ||| || | ||||||||||||||||||||| |
|
|
| T |
39288230 |
ggtgcaattacctgggttaccagtgttagaggtaaaagatcttccttcactgttgcttccttctagtcctcttcat |
39288155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University