View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16400_high_3 (Length: 301)
Name: NF16400_high_3
Description: NF16400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16400_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 10 - 171
Target Start/End: Complemental strand, 6652925 - 6652764
Alignment:
| Q |
10 |
aagaatattgtcacgcaacaacaaaaggtcatgttggtttttgtgctacccatcaagaataagttgttatacttattcatctttaagaatcagagaaact |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6652925 |
aagagtattgtcacgcaacaacaaaaggtcatgttggtttttgtgctacccatcaagaataacttgttatacttattcatctttaagaatcagagaaact |
6652826 |
T |
|
| Q |
110 |
cggtctaaattgcatgatgataagcataagctgatttttctaacaacctaagctccaagcgg |
171 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6652825 |
cagtctaaattgcatgatgataagcataagcggatttttctaacaacctaagctccaagcgg |
6652764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 193 - 295
Target Start/End: Original strand, 32401632 - 32401734
Alignment:
| Q |
193 |
ctacgcacaaatggcattgtctcacataagattcttccctcacacacttccttctacaaatttcactctaaaactcaaactcaaccataaccgatttttc |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
32401632 |
ctacgcacaaatggcattgtctcacataagattcttccctcacacacttccttctacaaacttcactccaaaactcaaactcaaccataaccgttttttc |
32401731 |
T |
|
| Q |
293 |
ttc |
295 |
Q |
| |
|
||| |
|
|
| T |
32401732 |
ttc |
32401734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 13247254 - 13247359
Alignment:
| Q |
48 |
ttttgtgctacccatcaagaataagttgttatacttattcatctttaagaatcagagaaactcggtctaaattgcatgatgataagcataagctgatttt |
147 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
13247254 |
ttttgtgctacccatcaaga-taagttgttatacttactcagctttaagaatcagagaaactcggtctaaattgcatgatgataggcataagcggatttt |
13247352 |
T |
|
| Q |
148 |
tctaaca |
154 |
Q |
| |
|
||||||| |
|
|
| T |
13247353 |
tctaaca |
13247359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 201 - 282
Target Start/End: Original strand, 45915025 - 45915112
Alignment:
| Q |
201 |
aaatggcattgtctcacataagattcttccctcaca------cacttccttctacaaatttcactctaaaactcaaactcaaccataa |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
45915025 |
aaatggcattgtctcacataagattcttccctcacacacttccacttccttctacaaacttcactccaaaactcaaactcaaccataa |
45915112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 283
Target Start/End: Original strand, 5456331 - 5456419
Alignment:
| Q |
201 |
aaatggcattgtctcacataagattcttccctcacacact------tccttctacaaatttcactctaaaactcaaactcaaccataac |
283 |
Q |
| |
|
||||| |||||| |||||||| |||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
5456331 |
aaatgacattgtgtcacataatattcttccctcacacacttccacttccttctacaaacttcactcaaaaactcaaactcaaccataac |
5456419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University