View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16400_high_7 (Length: 253)
Name: NF16400_high_7
Description: NF16400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16400_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 2462308 - 2462521
Alignment:
| Q |
17 |
aactcacaagcagattatgtgcacgctcacaacgaagcaagatctgaggttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaag |
116 |
Q |
| |
|
||||||||| |||| |||||| |||| |||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2462308 |
aactcacaatcagactatgtgaacgcccacaacgacgcaagacgtcaggttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaag |
2462407 |
T |
|
| Q |
117 |
actatgctaatcaacgcaagggtgattgtcaactgatccactccggtggtggtggccgttacggggaaaatctggcgtggagctctggcgacatgagtgg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2462408 |
actatgctaatcaacgcaagggtgattgtcaactgatccactccggtggtggtggccgttacggggaaaatctagcgtggagctctggcgacatgagtgg |
2462507 |
T |
|
| Q |
217 |
cacagatgcagtga |
230 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
2462508 |
ctcagatgcagtga |
2462521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 3063689 - 3063476
Alignment:
| Q |
17 |
aactcacaagcagattatgtgcacgctcacaacgaagcaagatctgaggttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaag |
116 |
Q |
| |
|
||||||| |||||| |||||| |||| |||||||| |||||| | |||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3063689 |
aactcacgagcagactatgtgaacgcccacaacgacgcaagacgtcaggttggtgttggagatattgtttgggacaatactgttgctagttttgcccaag |
3063590 |
T |
|
| Q |
117 |
actatgctaatcaacgcaagggtgattgtcaactgatccactccggtggtggtggccgttacggggaaaatctggcgtggagctctggcgacatgagtgg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3063589 |
actatgctaatcaacgcaagggtgattgtcaactgatccactccggtggtggtggccgctacggggaaaatctggcgtggagctctggcgacatgagtgg |
3063490 |
T |
|
| Q |
217 |
cacagatgcagtga |
230 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
3063489 |
ctcagatgcagtga |
3063476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 2466363 - 2466569
Alignment:
| Q |
18 |
actcacaagcagattatgtgcacgctcacaacgaagcaagatctgaggttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaaga |
117 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2466363 |
actcacaagcagactatgtgaacgctcacaacgaagcaagatctgaggttggtgttgcaaatattgtttgggacaatactgttgctagttttgctcaaga |
2466462 |
T |
|
| Q |
118 |
ctatgctaatcaacgcaagggtgattgtcaactgatccactccggtggtggtggccgttacggggaaaatctggcgtggagctctggcgacatgagtggc |
217 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| | ||| | || ||| | |||||| |
|
|
| T |
2466463 |
ctaagctaatcaacacaagggtgattgtcaactgatccactcc------ggtggccgttacggggagaatctcgcgggtagcaccggagacttaagtggc |
2466556 |
T |
|
| Q |
218 |
acagatgcagtga |
230 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2466557 |
tcagatgcagtga |
2466569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 2457738 - 2457949
Alignment:
| Q |
17 |
aactcacaagcagattatgtgcacgctcacaacgaagcaagatctgaggttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaag |
116 |
Q |
| |
|
|||||||||||||| |||||| || | ||||||||||||||| | ||||||||||||||||| |||| |||||||||| | |||||| | |||||||| |
|
|
| T |
2457738 |
aactcacaagcagactatgtgaactcccacaacgaagcaagacgtcaggttggtgttgcaaatgttgtctgggacaataatcttgctactgttgcccaaa |
2457837 |
T |
|
| Q |
117 |
actatgctaatcaacgcaagggtgattgtcaactgatccactccggtggtggtggccgttacggggaaaatctggcgtggagctctggcgacatgagtgg |
216 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||| |||||| |||||||||||||||||| ||||| || ||||| | || ||| ||||||| |
|
|
| T |
2457838 |
actatgctaattcacgcaggggtgattgtcgactgacccactc------tggtggccgttacggggagaatctcgcagggagcaccggagacttgagtgg |
2457931 |
T |
|
| Q |
217 |
cacagatgcagtgaggtt |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2457932 |
cacagatgcagtgaggtt |
2457949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 75 - 217
Target Start/End: Original strand, 2469742 - 2469881
Alignment:
| Q |
75 |
caaatattgtttgggacaatactgttgctagttttgcccaagactatgctaatcaacgcaagggtgattgtcaactgatccactccggtggtggtggccg |
174 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||| || ||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |
|
|
| T |
2469742 |
caaatattgtttgggacaacaaagttgctgcttttgcaaaaaactatgctaatcaacgcaagg---attgtcaactggtccactctggtggtggtggccg |
2469838 |
T |
|
| Q |
175 |
ttacggggaaaatctggcgtggagctctggcgacatgagtggc |
217 |
Q |
| |
|
|||||| || ||| | ||| |||| ||||| ||||||||||| |
|
|
| T |
2469839 |
ttacggagagaatatcgcggagagcactggcaacatgagtggc |
2469881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 18015631 - 18015844
Alignment:
| Q |
17 |
aactcacaagcagattatgtgcacgctcacaacgaagcaagatctgaggttggtgttgcaaatattgtttgggacaatactgttgctagttttgcccaag |
116 |
Q |
| |
|
||||||| |||||| |||||| |||| |||||||| |||||| | |||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18015631 |
aactcacgagcagactatgtgaacgcccacaacgacgcaagacgtcaggttggtgttggagatattgtttgggacaatactgttgctagttttgcccaag |
18015730 |
T |
|
| Q |
117 |
actatgctaatcaacgcaagggtgattgtcaactgatccactccggtggtggtggccgttacggggaaaatctggcgtggagctctggcgacatgagtgg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18015731 |
actatgctaatcaacgcaagggtgattgtcaactgatccactccggtggtggtggccgctacggggaaaatctggcgtggagctctggcgacatgagtgg |
18015830 |
T |
|
| Q |
217 |
cacagatgcagtga |
230 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
18015831 |
ctcagatgcagtga |
18015844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University