View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16400_low_4 (Length: 294)
Name: NF16400_low_4
Description: NF16400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16400_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 37562819 - 37563084
Alignment:
| Q |
18 |
cattaagcatgaaaataacgtctcactggccgagataacatcagcagatggcaaaggaaaagaaccagtgtctccattaaatcctcctccaggaagatca |
117 |
Q |
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| T |
37562819 |
cattaagcatgaaaataacgtctcactggccgagataacatcagcaaatggcaaaggaaaagaaccagtgtctccattaaatcctcctccaggaagatca |
37562918 |
T |
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| Q |
118 |
gctcctgaggctccaccacagccgccgcctccaccacctgctcttgcacctcggcctccacctcctccaaaaatggttaggcctccaccagctcctccca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37562919 |
gctcctgaggctccaccacagccgccgcctccaccacctgctcttgcacctcggcctccacctcctccaaaaatggttaggcctccaccggctcctccca |
37563018 |
T |
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| Q |
218 |
aaccaatggcaggtaggaaccaaaaatcccctctaggaccacttcgtactagtgacggtgatgatg |
283 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
37563019 |
aaccaatggtaggaaggaaccaaaaatcccctctaggaccacttcgtaccagtgagggtgatgatg |
37563084 |
T |
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