View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16400_low_5 (Length: 290)

Name: NF16400_low_5

Description: NF16400

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16400_low_5

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 177; E-Value: 2e-95

Query Start/End: Original strand, 93 - 273

Target Start/End: Original strand, 49265021 - 49265201

Alignment:

Q	93	ttgtcatgaattttctttaattagctgaatgaagtaatatatttagagtttgggtctaagatgctcatttcccatgttgaaatatcactcttatcactca	192	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	49265021	ttgtcatgaattttctttaattagctgaatgaagtaatatatttagagtttgggtctaagatgctcatttcccatgttgaaatatcactcttaacactca	49265120	T

Q	193	atcatcatagatcttttcaatttgggtgatgagtcagttctggtcatgtatgtaagtgcatccacaatttcaccaatgaga	273	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	49265121	atcatcatagatcttttcaatttgggtgatgagtcagttctggtcatgtatgtaagtgcatccacaatttcaccaatgaga	49265201	T

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Target: chr4; HSP #2

Raw Score: 31; E-Value: 0.00000003

Query Start/End: Original strand, 14 - 48

Target Start/End: Original strand, 49264937 - 49264971

Alignment:

Q	14	atgaatctataaatccttggttcatatgcgagtat	48	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	49264937	atgaatctataaatccttagttcatatgcgagtat	49264971	T

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