View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16400_low_6 (Length: 256)
Name: NF16400_low_6
Description: NF16400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16400_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 37953676 - 37953446
Alignment:
| Q |
17 |
tcgccgtcatctcattattaatcttcaataagatgtgggttccccttcctctccctccatgcacataaggaactcgtgggaatttagggtttacgtggga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
37953676 |
tcgccgtcatctcattattaatcttcaataagatgtgggttccccttcctctacctccatgcacataaggaactcgttggaatttagggtttacatggga |
37953577 |
T |
|
| Q |
117 |
aagtggaaagagtgttttctcatgaattttaggaagatagagtgtttagaaggctaattattgctgcataaataaggaaatttgattgaacttatgtttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37953576 |
aagtggaaagagtgttttctcatgaattttaggaagatagagtgtttagaaggctaattattgctgcataaataaggaaatttgattgaacttatgtttt |
37953477 |
T |
|
| Q |
217 |
aattgttttaatgatgattgtgtgatgatgt |
247 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
37953476 |
aattgttttaatgatgattgtgtgaagatgt |
37953446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University