View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16401_high_10 (Length: 407)
Name: NF16401_high_10
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16401_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 100 - 386
Target Start/End: Complemental strand, 2358314 - 2358027
Alignment:
| Q |
100 |
ttttccttctgaaattatacatagccattgattaagaaataaatatggttgagagtgtacgtgatgagatatatacagagtagcattaattcgttttgca |
199 |
Q |
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| T |
2358314 |
ttttccttctgaaattatacatagccattgattaagaaataaatatggttgagagtgtacgtgatgagatatatacagagtagcattaattcgttttgca |
2358215 |
T |
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| Q |
200 |
agtacgtacacaagtatcaaaagaacaaagtagtcgaggacatttcaattatgtatttacctacacattg-nnnnnnnnagtattacccctccacgagat |
298 |
Q |
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| T |
2358214 |
agtacgtacacaagtatcaaaagaaccaagtagtcgaggacatttcaattatgtatttacctacacattgtttttttttagtattacccctccacgagat |
2358115 |
T |
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| Q |
299 |
aaatctatctactttaccacacttaattaattttgtccccgcaattttattttgcatcctcactctttctccaattctttgtagcctc |
386 |
Q |
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| T |
2358114 |
aaatctatctactttaccacacttaattaattttgtccccgtaattttattttgcatcctcactctttctccaattctttgtagcctc |
2358027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 2358457 - 2358359
Alignment:
| Q |
5 |
tgtcgaagaaaatctataatattaattgttggtatatcatataatgtttgagatatgaatgatatattatagttcttaacagcaatatattctaatttt |
103 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2358457 |
tgtcaaagaaaatctataatattaattgttggtatatcatataatgttttagatatgaatgatatattatagttcttaacagcaatatattctaatttt |
2358359 |
T |
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