View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16401_high_11 (Length: 372)
Name: NF16401_high_11
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16401_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 42071558 - 42071872
Alignment:
| Q |
19 |
aatatgtcactagtttctttatgattagatgtttgaataaatggtgaatttgacaaaatcacagtttcaaaatatagcttttgtcaaaatcacgtaggct |
118 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42071558 |
aatatgtcattagtttctttatgattagatgtttgaataaacggtgaatttgacaaaatcacagtttcaaaatatagcttttgtcaaaatcacgtaggct |
42071657 |
T |
|
| Q |
119 |
catcaaaattgtgtctatgtaagaatatatgttgaaaaatgttaaaacctaaaatagatgctagtatctcgagagattagtttgtacatatcagtctaga |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42071658 |
catcaaaattgtgtctatggaagaatatatgttgaaaaatgttaaaacctaaaatagatgttagtatctcgagagattagtttgtacatatcagtctaga |
42071757 |
T |
|
| Q |
219 |
tatctgaattcatataacaacaaacacttcggatcaaagacatacatgtctaatgttcaaatggaacatatggttacattcaattaatcaattttctcaa |
318 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42071758 |
tatctgaattcatacaacaacgaacacttcggatcaaagacatacatgtctaatgttcaaatggaacatatggttacattcaattaatcaattttctcaa |
42071857 |
T |
|
| Q |
319 |
tttattattatcggt |
333 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
42071858 |
tttattattatcggt |
42071872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 134 - 248
Target Start/End: Original strand, 42055473 - 42055589
Alignment:
| Q |
134 |
tatgtaagaatatatgttgaaaaatgttaaaacctaaaatagatgctagtatctcgagaga--ttagtttgtacatatcagtctagatatctgaattcat |
231 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||| ||||||||| ||||||||||||||| ||||| | | |||| | | |||||||||||||||| |
|
|
| T |
42055473 |
tatgtaagaacatttgttgaaaaatgttaacccctcaaatagatgttagtatctcgagagagattagtctttgcataccggcatagatatctgaattcac |
42055572 |
T |
|
| Q |
232 |
ataacaacaaacacttc |
248 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
42055573 |
ctaacaataaacacttc |
42055589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 329
Target Start/End: Original strand, 42080614 - 42080768
Alignment:
| Q |
171 |
aatagatgctagtatctcgagagattagtttgtacatatcagtctagatatctgaattcatataacaacaaacacttcggatcaaagacatacatgtcta |
270 |
Q |
| |
|
|||||||| |||||||||| |||| || | | |||||| || ||| ||||||||||||| |||||| | ||||||| ||| ||| ||| || | |
|
|
| T |
42080614 |
aatagatgttagtatctcgtatgattggtctttgcatatcggtttaggtatctgaattcatctaacaatagacacttcatatcgaaggcat----gtttt |
42080709 |
T |
|
| Q |
271 |
atgttcaaatggaacatatggttacattcaattaatcaattttctcaatttattattat |
329 |
Q |
| |
|
|| || |||||| |||||||||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
42080710 |
atatttaaatggcacatatggttacattcaatttttcaattttctcaatatactattat |
42080768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 9483433 - 9483390
Alignment:
| Q |
284 |
acatatggttacattcaattaatcaattttctcaatttattatt |
327 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| |||||||| |
|
|
| T |
9483433 |
acatatggttacattcaattattctattttctcaaattattatt |
9483390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University