View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16401_high_23 (Length: 202)
Name: NF16401_high_23
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16401_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 38814667 - 38814715
Alignment:
| Q |
136 |
ttagaggcccgggttggataacgacaaagaattatttgagccccaaatc |
184 |
Q |
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| T |
38814667 |
ttagaggcccgggttggataacgacaaagaattatttgagccccaaatc |
38814715 |
T |
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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 38814549 - 38814592
Alignment:
| Q |
18 |
caaagataaagagaagaaagttgtaagtggcaactctcaagcag |
61 |
Q |
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| T |
38814549 |
caaagataaagagaagaaagatgtaagtggcaactctcaagcag |
38814592 |
T |
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