View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16401_high_4 (Length: 514)
Name: NF16401_high_4
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16401_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 20 - 508
Target Start/End: Complemental strand, 35681546 - 35681058
Alignment:
| Q |
20 |
agtggaggttttgtttatcaagaaactgaactaataggatagcagcaaggtgataatgttgaagaataggattgcagagattaaaaatatcacaccttaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35681546 |
agtggaggttttgtttatcaagaaactgaactaataggatagcggcaaggtgataatgttgaagaataggattgcagagattaaaaacatcacaccttaa |
35681447 |
T |
|
| Q |
120 |
gaaaatgaaggcaaagtatggatccttataaatgtatttattgtgtttgcccattgtgtgtacccttcctacttcttccacatcatgaagcaaccgcaac |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35681446 |
gaaaatgaaggcaaagtatggatccttataaatgtatttattgtgtttgcccattgtgtgtacccttcctacttcttccacatcatggcgcaaccgcaac |
35681347 |
T |
|
| Q |
220 |
caatgagccactgtttctggattgaagcactgacctttctcagcaaaattgtctatcttcacgtcggacgcatctaggggagagtttataatatcttgaa |
319 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35681346 |
caatgacccactgtttctggattgaagcactgacctttctcagcaaaattgtctatcttcacgtcggacgcatctaggggagagtttataatatcttgaa |
35681247 |
T |
|
| Q |
320 |
agttcaactttgcagcatttagcgcttcattactctcagttgcagtgtcgcagacttttaccacaaccgagcatgtgttgtgaaattttgccaaatcagt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35681246 |
agttcaactttgcagcatttagcgcttcattactctcagttgcagtgtcgcagacttttaccgcaaccgagcatgtgttgtgaaattttgccaaatcagt |
35681147 |
T |
|
| Q |
420 |
ttgtgcttttggcttatcacaatctctaatcatttttctgttagccaaaaaccctatgctgccattggtgtcattccttttcttctcac |
508 |
Q |
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| T |
35681146 |
ttgtgcttttggcttatcacaatctctaatcatttttctgttagccaaaaaccctatgctgccattggtgtcatgccttttcttatcac |
35681058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 5e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 172 - 416
Target Start/End: Original strand, 32535070 - 32535314
Alignment:
| Q |
172 |
attgtgtgtacccttcctacttcttccacatcatgaagcaaccgcaaccaatgagccactgtttctggattgaagcactgacctttctcagcaaaattgt |
271 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32535070 |
attgtgtgtacccttcctacttcttccacatcataacacaaccgcagccaatgagctactgtttctggattgaagcactcacctttctcagcaaaattgt |
32535169 |
T |
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| Q |
272 |
ctatcttcacgtcggacgcatctaggggagagtttataatatcttgaaagttcaactttgcagcatttagcgcttcattactctcagttgcagtgtcgca |
371 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||| ||||||||||||||||||||| |||| | |
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| T |
32535170 |
ctatcttcacgtcggacgcatctaggggagagttgataatatccggaaagttcaactctgcagcatttagtgcttcattactctcagttgcaatgtcata |
32535269 |
T |
|
| Q |
372 |
gacttttaccacaaccgagcatgtgttgtgaaattttgccaaatc |
416 |
Q |
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| T |
32535270 |
gacttttaccgcagcggagcatgtgtcgcgaagttttgccaaatc |
32535314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 58 - 172
Target Start/End: Complemental strand, 37192233 - 37192119
Alignment:
| Q |
58 |
atagcagcaaggtgataatgttgaagaataggattgcagagattaaaaatatcacaccttaagaaaatgaaggcaaagtatggatccttataaatgtatt |
157 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||||||| |
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| T |
37192233 |
atagcagcaaggtgataatgttgaagaataggattgcagagattaaaaacatcacaccttaagaaaatgaaggcataggatggatccttagaaatgtatt |
37192134 |
T |
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| Q |
158 |
tattgtgtttgccca |
172 |
Q |
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||||||||| |||| |
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| T |
37192133 |
cattgtgtttcccca |
37192119 |
T |
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