View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16401_high_6 (Length: 470)
Name: NF16401_high_6
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16401_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 20978402 - 20978872
Alignment:
| Q |
1 |
atataagagtgctcaagttgtggatacatcgacatcaagattttttaatggtccttaacaagtatcataaa---------------tggtctttccattt |
85 |
Q |
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| T |
20978402 |
atataagagtgctcaagttgtggatacattgacttcaagattttttaatggtccttaacaagtatcataaacattgtgtacacaaatggtctttccattt |
20978501 |
T |
|
| Q |
86 |
ttacttgtgaaattcatatataggaaataagaacatggagttggattttaatatcttcagcatatgatttttgttgcaagtagttctaattagtacttta |
185 |
Q |
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| T |
20978502 |
ttacttgtgaaattcatatataggaaataagaacatggagttggattttaatatcttcagcatatgatttttgttgtaagtagctctaattagtacttta |
20978601 |
T |
|
| Q |
186 |
tgagatggaatttactatattgaaatctttgtttagtaatctctgtttttatcctactaatttaataatctttgtttttatttaactttgattgttctca |
285 |
Q |
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| T |
20978602 |
tgagatggaatttactatattgaaatctttgttaagtaatctctgtttttatcctactaatttaataatctttgtttttatttaactttgattgttctta |
20978701 |
T |
|
| Q |
286 |
aattgtcctaatcaatcataaaaatgcagaaaatatatcaatttcaaataagaatttgcagcaaaagagaaaataagtgtagtggtaataataaggatga |
385 |
Q |
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| T |
20978702 |
aattgtcctaatcaatcataaaaatgcagaaaatatatctatttcaaataagaatttgcagcaaaagagaaaataagtgtagtgg---taataaggatga |
20978798 |
T |
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| Q |
386 |
aatgaatttaatttaaaatatattcatagattttattgacagacaatcc------agaagtcaaatatcgacta |
453 |
Q |
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| T |
20978799 |
aatgaatttaatttaaaatatattcatagattttattgacagacaatccttaggtagaagtcaaatatcgacta |
20978872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 177 - 434
Target Start/End: Complemental strand, 26819243 - 26818989
Alignment:
| Q |
177 |
agtactttatgagatggaatttactatattgaaatctttgtttagtaatctctgtttttatcctactaatttaataatctttgtttttatttaactttga |
276 |
Q |
| |
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|||||||||||| |||||| || |||| |||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| || ||||| |
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| T |
26819243 |
agtactttatgaaatggaacttgctatgttgaaatctttgttgagtaatctctgtttttatcctcataatttagtaatctttgtttttatctaggtttga |
26819144 |
T |
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| Q |
277 |
ttgttctcaaattgtcctaatcaatcataaaaatgcagaaaatatatcaatttcaaataagaatttgcagcaaaagagaaaataagtgtagtggtaataa |
376 |
Q |
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| T |
26819143 |
ttgttgttaaattgtcctaatctatcataataatgtagaaaatatatttatttaaaataagaatttgcagcaaaagagaaaataattttagtggta---a |
26819047 |
T |
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| Q |
377 |
taaggatgaaatgaatttaatttaaaatatattcatagattttattgacagacaatcc |
434 |
Q |
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| T |
26819046 |
taagggtgaaattaatttaatttaaaatatattaatagattttagtgacagacaatcc |
26818989 |
T |
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