View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16401_low_1 (Length: 741)

Name: NF16401_low_1
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16401_low_1
NF16401_low_1
[»] chr4 (7 HSPs)
chr4 (37-731)||(6019058-6019752)
chr4 (279-526)||(16422337-16422589)
chr4 (364-525)||(44203602-44203764)
chr4 (379-477)||(41389181-41389283)
chr4 (355-477)||(41389294-41389420)
chr4 (353-432)||(44037195-44037276)
chr4 (403-494)||(33818875-33818966)
[»] chr5 (3 HSPs)
chr5 (297-526)||(408129-408356)
chr5 (360-477)||(41485065-41485184)
chr5 (546-612)||(408379-408445)
[»] scaffold0025 (1 HSPs)
scaffold0025 (355-525)||(36852-37022)
[»] chr6 (4 HSPs)
chr6 (380-526)||(16358754-16358901)
chr6 (380-527)||(18849537-18849686)
chr6 (357-495)||(26141533-26141679)
chr6 (409-495)||(26045833-26045920)
[»] scaffold0215 (1 HSPs)
scaffold0215 (380-526)||(24761-24909)
[»] chr8 (3 HSPs)
chr8 (380-526)||(3372107-3372255)
chr8 (452-526)||(9035580-9035654)
chr8 (358-447)||(9035189-9035280)
[»] chr3 (2 HSPs)
chr3 (353-533)||(4477389-4477573)
chr3 (359-425)||(26641423-26641491)
[»] chr2 (3 HSPs)
chr2 (378-487)||(41454863-41454974)
chr2 (355-495)||(13693723-13693865)
chr2 (297-344)||(45224858-45224904)
[»] chr1 (1 HSPs)
chr1 (353-526)||(35812107-35812283)
[»] chr7 (2 HSPs)
chr7 (353-477)||(33164297-33164426)
chr7 (401-533)||(28195313-28195444)


Alignment Details
Target: chr4 (Bit Score: 638; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 37 - 731
Target Start/End: Complemental strand, 6019752 - 6019058
Alignment:
Q  37 tcattgacttgttatgttattgattgcagactcacgagaaacaagtcgtcacgtcggtgatgaattcccctcacatgatttggttgaaaacattgtagaa 136  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019752 tcattgacttgttatgttattgattgcacactcacgagaaacaagtcgtcacgtcggtgatgaattcccctcacatgatttggttgaaaacattgtagaa 6019653  T
Q  137 actcacgagagcgaggtccttcttcggatttgactgagaacatgttgtagaagttcgccttataagccatatctgcaaaacctctaaagcatggatactc 236  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019652 actcacgagagcgaggtccttctttggatttgactgagaacatgttgtagaagttcgccttataagccatatctgcaaaacctctaaagcatggatactc 6019553  T
Q  237 gtaaaatagtgaagtatctgtattgggtatccgtccataccagatacgtgtacagtgcttgtggtactccattttttctcattattgtattgtgaaatga 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019552 gtaaaatagtgaagtatctgtattgggtatccgtccataccagatacgtgtacagtgcttgtggtactccattttttctcattattgtattgtgaaatga 6019453  T
Q  337 aatttgtgannnnnnncttatacattaatataacaatatactattatttatgcgtttgagtttctgttgttgtaaccaactctaaatttcgactttttaa 436  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019452 aatttgtgatttttttcttatacattaatataacaatatactattatttatgcgtttgagtttctgttgttgtaaccaactctaaatttcgactttttaa 6019353  T
Q  437 atttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatgattttattgacgtacttgtaccnnn 536  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  6019352 atttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatgattttattgacgtacttgtaccttt 6019253  T
Q  537 nnnnnaatgttgtcgtattctggaaccagtactcgtatcgtaccagataccatacccgttcctatgcatcatagttgcaaactttcaagtgacattttac 636  Q
         |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019252 tttttaatgttgtcgtattttggaaccagtactcgtatcgtaccagataccatacccgttcctatgcatcatagttgcaaactttcaagtgacattttac 6019153  T
Q  637 ctgatattgacaattgcttcgttttggatctaagctataaaatagaaaattagtgacgacgaagaaactaatttaccatatagctcatatctctg 731  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019152 ctgatattgacaattgcttcgttttggatctaagctataaaatagaaaattagtgacgacgaagaaactaatttaccatatagctcatatctctg 6019058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 279 - 526
Target Start/End: Complemental strand, 16422589 - 16422337
Alignment:
Q  279 gatacgtgtacagtgcttgtggtactccattttttctcattattgtattgtgaaatgaaatttgtgannnnnnncttatacattaatataacaatatact 378  Q
    |||||| ||||||| || |||||||| ||||||||||||||||||||||||||  |||||||| |||       |||||||| |||||| |||||||| |    
T  16422589 gatacgcgtacagtactcgtggtacttcattttttctcattattgtattgtgag-tgaaatttatgacattct-cttatacactaatatgacaatataat 16422492  T
Q  379 at-----tatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaaga 471  Q
    ||     ||||| ||  ||| ||||| |  |||  ||||||||||||||||||| ||||||||||| ||||  |||||| |||||| || |||| |||||    
T  16422491 ataatattatttgtgtatttaagtttatttgttactgtaaccaactctaaattttgactttttaaacttctattgtgatttttttgctgcgaatcgaaga 16422392  T
Q  472 atttaaatctttcatgttgtattccataacaaaatttatgattttattgacgtac 526  Q
    |||||| ||||||||||| ||||| ||||||||| || |||||||| | ||||||    
T  16422391 atttaactctttcatgttatattctataacaaaacttctgattttactaacgtac 16422337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 364 - 525
Target Start/End: Complemental strand, 44203764 - 44203602
Alignment:
Q  364 atataacaatatactattatttatgcgtttgagtttctgttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtga 463  Q
    |||||| ||||||  ||||||| ||| ||||| |||  ||||||||||||||||||||||||| ||||||| ||||| |  |||| | |||||||||| |    
T  44203764 atataataatatagcattatttgtgcatttgaattt--gttgttgtaaccaactctaaatttcaacttttttaatttttattgtgctgtttttgttgtca 44203667  T
Q  464 attgaagaatttaaatctttcatgttgtatt---ccataacaaaatttatgattttattgacgta 525  Q
     ||||||||||||  |||| |||||| ||||     ||||||||| |||||||||||||||||||    
T  44203666 gttgaagaatttatctcttccatgttatattatagtataacaaaacttatgattttattgacgta 44203602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 379 - 477
Target Start/End: Complemental strand, 41389283 - 41389181
Alignment:
Q  379 attatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtga--tatttttgttgtgaattgaagaatt 474  Q
    |||||||||||||||||||||||  |||||| ||||||||||| | |||||||||||||||||| |  |||||  | ||||| |||||||||||||||||    
T  41389283 attatttatgcgtttgagtttctttgttgttataaccaactcttagtttcgactttttaaatttttattgtgagtttttttttttgtgaattgaagaatt 41389184  T
Q  475 taa 477  Q
    |||    
T  41389183 taa 41389181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 355 - 477
Target Start/End: Complemental strand, 41389420 - 41389294
Alignment:
Q  355 tatacattaatataacaatatactattatttatgcgtttgagtttct-----gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtga 449  Q
    ||||||||||||| |||||||| |||||||| || |||||| |||||     |||||| ||| ||||| ||| |||||||||||||||||||| |  |||    
T  41389420 tatacattaatatgacaatata-tattatttttgtgtttgattttctttgttgttgttataatcaactataagtttcgactttttaaatttctaacctga 41389322  T
Q  450 tatttttgttgtgaattgaagaatttaa 477  Q
      ||||||||||||||| ||||||||||    
T  41389321 attttttgttgtgaattaaagaatttaa 41389294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 353 - 432
Target Start/End: Original strand, 44037195 - 44037276
Alignment:
Q  353 cttatacattaatataacaatatactattatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgacttt 432  Q
    ||||||||| ||||| |||||| | ||||| || || ||||||||||||  |||||||||||||||||||||||||||||||    
T  44037195 cttatacatcaatatgacaatacaatattacttgtgtgtttgagtttctttgttgttgtaaccaactctaaatttcgacttt 44037276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 494
Target Start/End: Original strand, 33818875 - 33818966
Alignment:
Q  403 ttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtatt 494  Q
    |||||||| ||||||||||  ||| ||||||||||||| ||   |||| |||||||||  ||||||||||||||  ||| ||||||| ||||    
T  33818875 ttgttgtagccaactctaatattctactttttaaatttttggcttgatgtttttgttgcaaattgaagaatttagctctctcatgttatatt 33818966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 2e-66; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 297 - 526
Target Start/End: Original strand, 408129 - 408356
Alignment:
Q  297 gtggtactccattttttctcattattgtattgtgaaatgaaatttgtgannnnnnncttatacattaatataacaatatactattatttatgcgtttgag 396  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||||        ||||||||||||||  ||||||||||||||||| ||||||||||    
T  408129 gtggtactccatttttgctcattattgtattgtgag-tgaaatttgtg-gctttctcttatacattaata--acaatatactattatttgtgcgtttgag 408224  T
Q  397 tttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtatt 494  Q
    |||||  |||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  408225 tttctttgttgttgtaaccgactctaaatttggactttttaaacttctgatgtgatttttttgttgtgaattgaagaatttaattctttcatgttatatt 408324  T
Q  495 ccataacaaaatttatgattttattgacgtac 526  Q
    | ||||||||| ||||||||||||||||||||    
T  408325 ctataacaaaacttatgattttattgacgtac 408356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 360 - 477
Target Start/End: Complemental strand, 41485184 - 41485065
Alignment:
Q  360 attaatataacaatatactattatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttg 457  Q
    |||||||| ||||| || |||||||| |||| ||||||||||  ||| |||||||||||| ||||||| |||||| |||| ||||  |||||| ||||||    
T  41485184 attaatatgacaatttaatattatttgtgcgcttgagtttctttgttattgtaaccaactttaaattttgactttgtaaacttctattgtgatttttttg 41485085  T
Q  458 ttgtgaattgaagaatttaa 477  Q
    | ||||||||||||||||||    
T  41485084 tcgtgaattgaagaatttaa 41485065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 546 - 612
Target Start/End: Original strand, 408379 - 408445
Alignment:
Q  546 ttgtcgtattctggaaccagtactcgtatcgtaccagataccatacccgttcctatgcatcatagtt 612  Q
    ||| |||||||| | ||||||||  |||||||||||| |||| ||||||| |||||||| |||||||    
T  408379 ttgccgtattctcgtaccagtacctgtatcgtaccaggtaccgtacccgtgcctatgcaacatagtt 408445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 355 - 525
Target Start/End: Original strand, 36852 - 37022
Alignment:
Q  355 tatacattaatataacaatatactattatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatat 452  Q
    ||||||||||||| | |||||| | |||||| |||||||||||||||  |||||||||||||  |||||||||| |||||||||| |  | |||||||      
T  36852 tatacattaatatgataatataatgttatttgtgcgtttgagtttctttgttgttgtaacca--tctaaatttcaactttttaaactattaatgtgatta 36949  T
Q  453 ttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatgattttattgacgta 525  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||    
T  36950 ttttgttgtgaattgaagaatttaactctttcatgttatattctataacaaaacttatgattttattgacgta 37022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 1e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 380 - 526
Target Start/End: Complemental strand, 16358901 - 16358754
Alignment:
Q  380 ttatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaa 477  Q
    |||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||| |||| ||||||| || || || |||||||||||||||||    
T  16358901 ttatttgtgcgtttgagtttctttgttgttgtaaccaactctaaatttcgactttttaaacttctaatgtgattttctt-ttatgaattgaagaatttaa 16358803  T
Q  478 atctttcatgttgtattccataacaaaatttatgattttattgacgtac 526  Q
     || |||||||| ||||| ||||||||| ||||||||||||||||||||    
T  16358802 ctccttcatgttatattctataacaaaacttatgattttattgacgtac 16358754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 380 - 527
Target Start/End: Original strand, 18849537 - 18849686
Alignment:
Q  380 ttatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaa 477  Q
    |||||| ||| |||||||||||  ||||||||||||||||||||||||||| |||||||| |||| ||||||| || ||||| |||||||||||||||||    
T  18849537 ttatttgtgcatttgagtttctttgttgttgtaaccaactctaaatttcgaatttttaaacttctaatgtgattttcttgttatgaattgaagaatttaa 18849636  T
Q  478 atctttcatgttgtattccataacaaaatttatgattttattgacgtact 527  Q
     || |||||||| ||||| || |||||| |||||||||||||||||||||    
T  18849637 ctccttcatgttatattctatgacaaaacttatgattttattgacgtact 18849686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 357 - 495
Target Start/End: Complemental strand, 26141679 - 26141533
Alignment:
Q  357 tacattaatataacaatatactattatttatgcgtttgagtttctgttgttg--------taaccaactctaaatttcgactttttaaatttctgatgtg 448  Q
    ||||||||||| ||| |||| |||||||| ||| ||||||||||| ||||||        ||||||||||||||||| ||||||||||| |||| ||||     
T  26141679 tacattaatatgacactataatattatttgtgcatttgagtttct-ttgttgctttaatataaccaactctaaattttgactttttaaacttctaatgtc 26141581  T
Q  449 atatt-tttgttgtgaattgaagaatttaaatctttcatgttgtattc 495  Q
    || || ||| || | ||||||||||||||| |||| |||||| |||||    
T  26141580 attttattttttataaattgaagaatttaactcttccatgttatattc 26141533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 409 - 495
Target Start/End: Complemental strand, 26045920 - 26045833
Alignment:
Q  409 taaccaactctaaatttcgactttttaaatttctgatgtgatatt-tttgttgtgaattgaagaatttaaatctttcatgttgtattc 495  Q
    ||||||||||||||||| ||||||||||| |||| |||| || || ||| || | ||||||||||||||| |||| |||||| |||||    
T  26045920 taaccaactctaaattttgactttttaaacttctaatgtcattttattttttataaattgaagaatttaactcttccatgttatattc 26045833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0215 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 380 - 526
Target Start/End: Complemental strand, 24909 - 24761
Alignment:
Q  380 ttatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaa 477  Q
    |||||| ||||| |||||||||  ||||||||||||||||||||||||||| |||||||| |||| ||||||| || ||||| |||||||||||||||||    
T  24909 ttatttgtgcgtgtgagtttctttgttgttgtaaccaactctaaatttcgaatttttaaacttctaatgtgattttcttgttatgaattgaagaatttaa 24810  T
Q  478 atctttcatgttgtattccataacaaaatttatgattttattgacgtac 526  Q
     || |||||||| ||||| || |||||| ||||||||||||||||||||    
T  24809 ctccttcatgttatattctatgacaaaacttatgattttattgacgtac 24761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 380 - 526
Target Start/End: Complemental strand, 3372255 - 3372107
Alignment:
Q  380 ttatttatgcgtttgagtttctgt--tgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaa 477  Q
    |||||| ||| ||||||||||| |  ||||||||||||||||||||||||| |||||||| |||| ||||||| || ||||| |||||||||||||||||    
T  3372255 ttatttgtgcatttgagtttctttattgttgtaaccaactctaaatttcgaatttttaaacttctaatgtgattttcttgttatgaattgaagaatttaa 3372156  T
Q  478 atctttcatgttgtattccataacaaaatttatgattttattgacgtac 526  Q
     || |||||||| ||||| || |||||| ||||||||||||||||||||    
T  3372155 ctccttcatgttatattctatgacaaaacttatgattttattgacgtac 3372107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 452 - 526
Target Start/End: Original strand, 9035580 - 9035654
Alignment:
Q  452 tttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatgattttattgacgtac 526  Q
    ||||||||| |||||||||||||||| ||||||||||| | ||| | ||||||||||||||||||||||||||||    
T  9035580 tttttgttgggaattgaagaatttaactctttcatgttattttctaaaacaaaatttatgattttattgacgtac 9035654  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 358 - 447
Target Start/End: Original strand, 9035189 - 9035280
Alignment:
Q  358 acattaatataacaatatactattatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgt 447  Q
    |||||||||| |||||||| | |||||| |  ||||| ||||||  |||||||||||||||||||||||||||||| ||||| |||| ||||    
T  9035189 acattaatatgacaatataatgttatttgtatgtttgcgtttctttgttgttgtaaccaactctaaatttcgacttcttaaacttctaatgt 9035280  T

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Target: chr3 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 353 - 533
Target Start/End: Complemental strand, 4477573 - 4477389
Alignment:
Q  353 cttatacattaatataacaatatactattatttatgcgtttgagtttct-----gttgttgtaaccaactctaaatttcgactttttaaatttctgatgt 447  Q
    ||||||||| |||||||||||||| |||||||| |  |||||||||| |     |||||| || |||||||||  |||| |||||||||| |||| ||||    
T  4477573 cttatacatcaatataacaatataatattatttgtatgtttgagtttttttgttgttgttttagccaactctatgtttcaactttttaaacttctaatgt 4477474  T
Q  448 gatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatgattttattgacgtacttgtacc 533  Q
    ||| ||||| |||||||| ||||||||||| | ||||||||| ||||| ||||||||| |||| ||||||||||||||| ||||||    
T  4477473 gat-tttttattgtgaatcgaagaatttaactttttcatgttatattctataacaaaacttataattttattgacgtacatgtacc 4477389  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 359 - 425
Target Start/End: Original strand, 26641423 - 26641491
Alignment:
Q  359 cattaatataacaatatactattatttatgcgtttgagtttct--gttgttgtaaccaactctaaattt 425  Q
    |||||||||  ||||||| | |||||| ||||||||||||| |  ||||||||||||||||||||||||    
T  26641423 cattaatatggcaatataatgttatttgtgcgtttgagtttttttgttgttgtaaccaactctaaattt 26641491  T

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Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 378 - 487
Target Start/End: Original strand, 41454863 - 41454974
Alignment:
Q  378 tattatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaattt 475  Q
    |||||||| ||| |||||||||||  ||| |||||||||||||||||||||||||||||||| ||||  |||||| |||||||||||||| |||||||||    
T  41454863 tattatttgtgcctttgagtttctttgttattgtaaccaactctaaatttcgactttttaaacttctattgtgatttttttgttgtgaatcgaagaattt 41454962  T
Q  476 aaatctttcatg 487  Q
    || |||||||||    
T  41454963 aactctttcatg 41454974  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 355 - 495
Target Start/End: Complemental strand, 13693865 - 13693723
Alignment:
Q  355 tatacattaatataacaatatactattatttatgcgtttgagtttct--gttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgatat 452  Q
    ||||||||||||  |||||||| | ||||||  ||||||| ||||||  |||||||||||||||||||||||| ||||||||||  ||||  |||||| |    
T  13693865 tatacattaataggacaatataatgttatttgcgcgtttgcgtttctttgttgttgtaaccaactctaaattttgactttttaatcttctattgtgattt 13693766  T
Q  453 ttttgttgtgaattgaagaatttaaatctttcatgttgtattc 495  Q
      |||||| ||||||||| |||||| || |||||||| |||||    
T  13693765 ccttgttgggaattgaagcatttaactcattcatgttatattc 13693723  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 344
Target Start/End: Original strand, 45224858 - 45224904
Alignment:
Q  297 gtggtactccattttttctcattattgtattgtgaaatgaaatttgtg 344  Q
    |||||||||||||||| ||||||||||||||||| | |||||||||||    
T  45224858 gtggtactccatttttgctcattattgtattgtg-agtgaaatttgtg 45224904  T

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Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 353 - 526
Target Start/End: Complemental strand, 35812283 - 35812107
Alignment:
Q  353 cttatacattaatataacaatatactattatttatgcgtttgagtttc---tgttgttgtaaccaactctaaatttcgactttttaaatttctgatgtga 449  Q
    |||||| |||||||| |||||||| | || | | ||| |||||||||    ||||||||||||||||||||  ||||||||||||||| || |   || |    
T  35812283 cttatagattaatatgacaatatagtgttgtatgtgcatttgagttttatttgttgttgtaaccaactctagttttcgactttttaaacttttatcgtaa 35812184  T
Q  450 tatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatgattttattgacgtac 526  Q
    |||||||||||| |||||||||||| |  ||| ||||||| ||||  ||||||||| | ||||||||||||||||||    
T  35812183 tatttttgttgtaaattgaagaattcagctctctcatgttatattatataacaaaactcatgattttattgacgtac 35812107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 353 - 477
Target Start/End: Complemental strand, 33164426 - 33164297
Alignment:
Q  353 cttatacattaatataacaatatactattatttatgcgtttgagtttc--tgttgttgtaaccaactctaaatttcgactttttaaatttctgatgtga- 449  Q
    ||||||||| ||||| |||| | | ||||| || || |||||||||||  ||||||||||||||||||||||||||||||||||||| |||| ||||||     
T  33164426 cttatacatcaatatgacaaaacaatattacttgtgtgtttgagtttcgttgttgttgtaaccaactctaaatttcgactttttaaacttctaatgtgat 33164327  T
Q  450 --tatttttgttgtgaattgaagaatttaa 477  Q
      | ||||||||||| || |||||||||||    
T  33164326 tttttttttgttgtggatagaagaatttaa 33164297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 401 - 533
Target Start/End: Original strand, 28195313 - 28195444
Alignment:
Q  401 tgttgttgtaaccaactctaaatttcgactttttaaatttctgatgtgat-atttttgttgtgaattgaagaatttaaatctttcatgttgtattccata 499  Q
    ||||||||||||||||||||| ||||||||||||||| ||||  ||||||  |||||||||  | ||||||||||||  ||  ||||||| ||||  |||    
T  28195313 tgttgttgtaaccaactctaattttcgactttttaaacttctattgtgatgttttttgttgaaagttgaagaatttaggtc--tcatgttatattatata 28195410  T
Q  500 acaaaatttatgattttattgacgtacttgtacc 533  Q
    |||||| | |||||||| |||||| || ||||||    
T  28195411 acaaaactcatgattttcttgacgcacctgtacc 28195444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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