View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16401_low_12 (Length: 370)
Name: NF16401_low_12
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16401_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 24 - 353
Target Start/End: Complemental strand, 37809710 - 37809378
Alignment:
| Q |
24 |
taattataaaaacaagacaagataggaagcaaatgatgttatattatctacgggacattttcaaaagagtatacccccacattacagtaacgatttattt |
123 |
Q |
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| T |
37809710 |
taattataaaaacaagacaagataggaagcaaatgatgttatattatctacgggacattttcaaaagagtatacccccacattacagtaacgatttattt |
37809611 |
T |
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| Q |
124 |
tccatggctccaaagttctgcatcgtatacaggactaaagtattcatgttcaagtaatatataatcttcatttggaaggacatataaactgtctattata |
223 |
Q |
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| T |
37809610 |
tccatggctccaaagttctgcatcgtatacaggactaaagtattcatgttcaagtaatatagaatcttcatttggaaggacatataaactgtctattata |
37809511 |
T |
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| Q |
224 |
tatggctctgtccagaaatttttactcacatatgcatccataaaaggaag---gtcatagtcatcaaaaagagaagaattttcatatgatattgtagtag |
320 |
Q |
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| T |
37809510 |
tatggctctgtccagaaattttcactcacatatgcatccataaaaggaaggtcgtcatagtcatcaaaaagagaagaattttcatatgatattgtagtag |
37809411 |
T |
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| Q |
321 |
tagctgcagtgtccattaatgctatgcaagagg |
353 |
Q |
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| T |
37809410 |
tagctgcagtgtccattaatgatatgcaagagg |
37809378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 37793666 - 37793567
Alignment:
| Q |
79 |
cattttcaaaagagtatacccccacattacagtaacgatttattttcca---tggctccaaagttctgcatcgtatacaggactaaagtattcatgttca |
175 |
Q |
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| T |
37793666 |
cattttcaaaagagtaaaccaccacattactgtaacaatttattctgcagtatggctccaaaattctacatcgtacacagaactaaagtattcatgttca |
37793567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 37792905 - 37792863
Alignment:
| Q |
201 |
ggacatataaactgtctattatatatggctctgtccagaaatt |
243 |
Q |
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| T |
37792905 |
ggacatatgaattgtctatcatatatggctctgtccagaaatt |
37792863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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