View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16401_low_13 (Length: 353)
Name: NF16401_low_13
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16401_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 35153694 - 35153555
Alignment:
| Q |
22 |
gtgaggttgaagataaagtgggaagatatacagtgtgggtagaccataataagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35153694 |
gtgaggttgaagataaagtgggaagatatacagtgtgggtagaccataataagatcagtgtatctcttcaatccagtgttcaaaaacagcctttcccatg |
35153595 |
T |
|
| Q |
122 |
atgggaaaaaacaacctttccccattctaaatggcaccaaa |
162 |
Q |
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| T |
35153594 |
atgggaaaaaacagcattt-cccaggctaaatggcaccaaa |
35153555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 42757049 - 42757121
Alignment:
| Q |
256 |
ttgatctaaatatattcctgaatcaatataataggtcaattgcaagattcgacttttctctctcttctctatgag |
330 |
Q |
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|||||||||||||||||||||||||| || |||| ||||||| | ||| |||| || ||||||||||||||||| |
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| T |
42757049 |
ttgatctaaatatattcctgaatcaacatgatagatcaattggaggatacgacctt--tctctcttctctatgag |
42757121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 53981313 - 53981451
Alignment:
| Q |
22 |
gtgaggttgaagataaagtgggaagatatacagtgtgggtagaccataataagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatg |
121 |
Q |
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||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53981313 |
gtgaggttgaagataaagtggaaagatatatagtgtgagtagaccataataaaatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatg |
53981412 |
T |
|
| Q |
122 |
atgggaaaaaacaacctttccccattctaaatggcacca |
160 |
Q |
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| T |
53981413 |
atgggaaaaaacagcctttccctaggctaaatggcacca |
53981451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 53975501 - 53975364
Alignment:
| Q |
22 |
gtgaggttgaagataaagtgggaagatatacagtgtgggtagaccataataagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatg |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| || |||||||| |
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| T |
53975501 |
gtgaggttgaagataaagtgggaagatatacagtgtggatagaccataataagattaatgtatctcttcaatccagtggtcaaaaacaacccttcccatg |
53975402 |
T |
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| Q |
122 |
atgggaaaaaacaacctttccccattctaaatggcacc |
159 |
Q |
| |
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||||||||||||| |||||||||| |||||||||||| |
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| T |
53975401 |
atgggaaaaaacagcctttccccaagctaaatggcacc |
53975364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 231 - 336
Target Start/End: Complemental strand, 49284186 - 49284081
Alignment:
| Q |
231 |
attaatagaaccctaaacaaaatttttgatctaaatatattcctgaatcaatataataggtcaattgcaagattcgacttttctctctcttctctatgag |
330 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49284186 |
attaatagaaccctaaacaaaaattttgatctaaatatattcctgaatcaatataataggtcaattgcaagattcgacttttatctctcttctctatgag |
49284087 |
T |
|
| Q |
331 |
gttcat |
336 |
Q |
| |
|
|||||| |
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|
| T |
49284086 |
gttcat |
49284081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 49287660 - 49287594
Alignment:
| Q |
160 |
aaacctttaaattatttgacataattttagacaaaattgtgtacatgcacccgaaccaaagagattg |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49287660 |
aaacctttaaattatttgacataattttagacaaaattgtgtacatgcacccgaaccaaggagattg |
49287594 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 17151790 - 17151901
Alignment:
| Q |
22 |
gtgaggttgaagataaagtgggaagatatacagtgtgggt-agaccataataagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccat |
120 |
Q |
| |
|
||||||||||||| | |||||||||||||| ||| ||||| || | || |||||||| ||||| ||||| |||| | ||||||||||| ||||||||| |
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| T |
17151790 |
gtgaggttgaagacagagtgggaagatatatagtatgggtaagcctatgataagatcggtgtacctctttaatctaatggtcaaaaactaactttcccat |
17151889 |
T |
|
| Q |
121 |
gatgggaaaaaa |
132 |
Q |
| |
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| ||| |||||| |
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| T |
17151890 |
ggtggaaaaaaa |
17151901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 17151090 - 17151017
Alignment:
| Q |
70 |
ataagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccatgatgggaaaaaacaacctttccc |
143 |
Q |
| |
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|||||||||||||| ||||| |||| |||||||||||| |||||||||| ||||||||| || |||||||| |
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| T |
17151090 |
ataagatcagtgtacctctttaatctagtggtcaaaaaataactttcccatggtgggaaaaaccagcctttccc |
17151017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 35612922 - 35612800
Alignment:
| Q |
22 |
gtgaggttgaagataaagtgggaagatatacagtgtgggtagacc-ataataagatcagtgtatctcttcaatccagtggtcaaaaacagcctttcccat |
120 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||| ||| || || || |||||||||||||| ||||| ||| |||| ||||||||| ||| |||| |
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| T |
35612922 |
gtgagattgaagacaaagtgggaagatatatagtatggataagcctatgataagatcagtgtacctctttaattcagttgtcaaaaactaatttttccat |
35612823 |
T |
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| Q |
121 |
gatgggaaaaaacaacctttccc |
143 |
Q |
| |
|
| ||||||||| || |||||||| |
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| T |
35612822 |
ggtgggaaaaatcagcctttccc |
35612800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 8383930 - 8383986
Alignment:
| Q |
22 |
gtgaggttgaagataaagtgggaagatatacagtgtgggtagaccataataagatca |
78 |
Q |
| |
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||||||||||||| ||||| || | ||||| |||||| | ||||||||||||||||| |
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| T |
8383930 |
gtgaggttgaagacaaagttgggaaatatatagtgtgtgcagaccataataagatca |
8383986 |
T |
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