View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16401_low_14 (Length: 334)

Name: NF16401_low_14
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16401_low_14
NF16401_low_14
[»] chr6 (7 HSPs)
chr6 (21-319)||(17278133-17278431)
chr6 (54-124)||(17266243-17266316)
chr6 (168-260)||(33968327-33968419)
chr6 (142-280)||(20500186-20500323)
chr6 (239-285)||(9224263-9224309)
chr6 (157-190)||(13098348-13098381)
chr6 (138-190)||(16180676-16180728)
[»] chr8 (6 HSPs)
chr8 (157-318)||(25184793-25184953)
chr8 (157-304)||(9831689-9831834)
chr8 (237-318)||(12197747-12197828)
chr8 (237-318)||(12442175-12442256)
chr8 (198-305)||(15906998-15907105)
chr8 (139-190)||(10248327-10248378)
[»] scaffold1613 (1 HSPs)
scaffold1613 (142-310)||(675-843)
[»] chr1 (23 HSPs)
chr1 (142-310)||(38544396-38544564)
chr1 (198-319)||(41126122-41126243)
chr1 (243-310)||(38546863-38546930)
chr1 (138-231)||(17033838-17033931)
chr1 (248-302)||(32863234-32863288)
chr1 (237-318)||(27905760-27905840)
chr1 (198-268)||(16577573-16577643)
chr1 (138-279)||(42374414-42374554)
chr1 (243-299)||(9313031-9313087)
chr1 (130-254)||(26602545-26602669)
chr1 (237-305)||(32882695-32882763)
chr1 (243-302)||(27102516-27102575)
chr1 (243-302)||(34775206-34775265)
chr1 (254-316)||(17033939-17034001)
chr1 (130-190)||(37200362-37200422)
chr1 (252-319)||(37200485-37200552)
chr1 (138-189)||(38548838-38548889)
chr1 (239-281)||(16149106-16149148)
chr1 (139-189)||(16577529-16577579)
chr1 (240-316)||(46603691-46603768)
chr1 (238-270)||(6582971-6583003)
chr1 (237-281)||(46768504-46768548)
chr1 (243-318)||(49820489-49820565)
[»] chr3 (9 HSPs)
chr3 (138-319)||(25594179-25594361)
chr3 (130-319)||(823068-823257)
chr3 (198-322)||(45354576-45354700)
chr3 (239-319)||(32010117-32010197)
chr3 (198-319)||(40689402-40689524)
chr3 (120-280)||(27399195-27399359)
chr3 (243-319)||(50518760-50518836)
chr3 (243-319)||(4171078-4171154)
chr3 (237-319)||(46358053-46358135)
[»] chr5 (10 HSPs)
chr5 (138-319)||(8731168-8731348)
chr5 (198-316)||(24071935-24072053)
chr5 (255-325)||(23426646-23426716)
chr5 (138-270)||(17853753-17853884)
chr5 (243-316)||(26405222-26405295)
chr5 (139-190)||(30097602-30097653)
chr5 (243-281)||(30097667-30097705)
chr5 (243-281)||(33258598-33258636)
chr5 (138-215)||(39183939-39184016)
chr5 (143-203)||(7195048-7195108)
[»] chr2 (25 HSPs)
chr2 (138-319)||(25504559-25504739)
chr2 (198-319)||(20572362-20572482)
chr2 (138-303)||(22884801-22884964)
chr2 (136-319)||(24308381-24308568)
chr2 (139-316)||(16952018-16952194)
chr2 (139-316)||(17022683-17022859)
chr2 (243-319)||(13337584-13337660)
chr2 (246-309)||(27740325-27740388)
chr2 (206-315)||(2063175-2063285)
chr2 (243-312)||(4472277-4472346)
chr2 (138-255)||(13698999-13699116)
chr2 (200-307)||(44593969-44594076)
chr2 (139-190)||(7696231-7696282)
chr2 (253-319)||(33788296-33788362)
chr2 (130-215)||(33788385-33788470)
chr2 (249-301)||(4975085-4975137)
chr2 (249-301)||(4992993-4993045)
chr2 (255-319)||(29487447-29487510)
chr2 (243-283)||(37770357-37770397)
chr2 (139-186)||(41113502-41113549)
chr2 (241-299)||(10173270-10173328)
chr2 (237-282)||(6173925-6173970)
chr2 (138-190)||(15126187-15126240)
chr2 (157-190)||(15360986-15361019)
chr2 (139-212)||(17060093-17060165)
[»] chr7 (12 HSPs)
chr7 (139-312)||(23983474-23983647)
chr7 (138-231)||(28534248-28534341)
chr7 (144-318)||(31409632-31409807)
chr7 (130-231)||(22567849-22567950)
chr7 (21-83)||(10621064-10621123)
chr7 (239-281)||(3478679-3478721)
chr7 (140-319)||(9427749-9427930)
chr7 (251-316)||(16828774-16828839)
chr7 (254-319)||(28534175-28534240)
chr7 (252-309)||(13312180-13312237)
chr7 (157-190)||(48058443-48058476)
chr7 (198-310)||(9107440-9107552)
[»] chr4 (7 HSPs)
chr4 (208-319)||(46487579-46487690)
chr4 (253-318)||(12296518-12296583)
chr4 (238-285)||(39420741-39420788)
chr4 (255-317)||(20632170-20632233)
chr4 (243-281)||(38930122-38930161)
chr4 (235-282)||(41117676-41117723)
chr4 (157-190)||(12296446-12296479)
[»] scaffold0050 (2 HSPs)
scaffold0050 (237-280)||(37035-37078)
scaffold0050 (126-187)||(36963-37024)
[»] scaffold0499 (1 HSPs)
scaffold0499 (157-190)||(6829-6862)


Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 17278431 - 17278133
Alignment:
Q  21 gcatcttctaccttaaataaatattaatctttgtttccaatcgatgagttggatttcttagatataattgatgcatgtaaattggtgtggaattttaata 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17278431 gcatcttctaccttaaataaatattaatctttgtttccaatcgatgagttggatttcttagatataattgatgcatgtaaattggtgtggaattttaata 17278332  T
Q  121 tatggtttacagtgtttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggct 220  Q
    ||| |||| ||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||  |||  |||||||||||||||||||||||    
T  17278331 tattgttttcagtgttcgtttcgtgaaggagtctgatttaggtggtaatgtttattttggtgggtgttgtccgcatgggtgttgaaggtagggtttggct 17278232  T
Q  221 agatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg 319  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||    
T  17278231 agatcttgtgttcaatggtgtcttttatgatgtttattttcgggtgttccgcctatatacgacgcctttagattgtattctctgaatcaccggtctctg 17278133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 17266316 - 17266243
Alignment:
Q  54 tttccaatcgatgagttggatttcttagatataat---tgatgcatgtaaattggtgtggaattttaatatatg 124  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||| || ||||||||    
T  17266316 tttccaatcgatgagttggatttcttagatataataactgatgcatgtaaatgggtgtggaacttcaatatatg 17266243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 33968419 - 33968327
Alignment:
Q  168 atgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttatttt 260  Q
    |||| ||||||||||||||||||   ||  ||||||||||||||||||||||||| |  ||||| ||  |||||||||||  |||||||||||    
T  33968419 atgtctattttggtgggtgttgtcctcaagggtgttgaaggtagggtttggctaggtgatgtgtgtaggggtgtcttttacagtgtttatttt 33968327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 20500186 - 20500323
Alignment:
Q  142 cgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatggtgt 241  Q
    ||||| ||||| || |||||||||   ||||| ||||||||| ||||||     ||||||||||||||||||||||| ||| |  | ||  ||   ||||    
T  20500186 cgtgatggagtctgatttaggtggagttgtttcttttggtggttgttgtccttggtggtgttgaaggtagggtttggttaggtggtttgcgtatgagtgt 20500285  T
Q  242 cttttatggtgtttattttcgggtgttccacctatatac 280  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  20500286 cttttatggtgtttatttt-gggtgttccgcctatatac 20500323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 9224263 - 9224309
Alignment:
Q  239 tgtcttttatggtgtttattttcgggtgttccacctatatacgacac 285  Q
    |||||||  |||||||||||||||||||||||  |||||||||||||    
T  9224263 tgtctttgttggtgtttattttcgggtgttccttctatatacgacac 9224309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 13098381 - 13098348
Alignment:
Q  157 tttaggtggtaatgtttattttggtgggtgttgt 190  Q
    |||||||||| |||||||||||||||||||||||    
T  13098381 tttaggtggtgatgtttattttggtgggtgttgt 13098348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 16180728 - 16180676
Alignment:
Q  138 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgt 190  Q
    ||||| |||||| || || |||||||||| |||||||||||||||| ||||||    
T  16180728 gtttcttgaaggggtctgttttaggtggtgatgtttattttggtggatgttgt 16180676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 157 - 318
Target Start/End: Complemental strand, 25184953 - 25184793
Alignment:
Q  157 tttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgttta 256  Q
    |||||||||| |||||||||||||||||||||||   ||   ||||||||||||||| |||||||| | |||||| ||  | ||||||||||||||||||    
T  25184953 tttaggtggtgatgtttattttggtgggtgttgtcctcatgagtgttgaaggtagggcttggctaggtattgtgtgtatggatgtcttttatggtgttta 25184854  T
Q  257 ttttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctct 318  Q
     || |||||||||||||||||||||||   ||||| ||||| ||||||||||||||||||||    
T  25184853 ctt-cgggtgttccacctatatacgacgtttttagtttgtactctctgaatcaccggtctct 25184793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 304
Target Start/End: Complemental strand, 9831834 - 9831689
Alignment:
Q  157 tttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgttta 256  Q
    ||||||||||||||||||||||| ||| |||||||  ||  ||||||||||||| |||| || ||| | |||||  ||  ||||| || ||||| |||||    
T  9831834 tttaggtggtaatgtttattttgatggatgttgttttcatgggtgttgaaggtatggttgggttaggtgttgtg--taggggtgttttgtatggagttta 9831737  T
Q  257 ttttcgggtgttccacctatatacgacacatttagattgtattctctg 304  Q
    |||||||||| ||  ||||||||||||   ||||| ||||||||||||    
T  9831736 ttttcgggtggtcggcctatatacgacgtctttagtttgtattctctg 9831689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 318
Target Start/End: Complemental strand, 12197828 - 12197747
Alignment:
Q  237 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctct 318  Q
    ||||||||||| |||||||||||||  ||||||| |||||| ||||| | ||||| ||||||||||||| |||||| |||||    
T  12197828 ggtgtcttttagggtgtttattttcccgtgttccgcctatagacgacgcctttagtttgtattctctgattcaccgatctct 12197747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 318
Target Start/End: Complemental strand, 12442256 - 12442175
Alignment:
Q  237 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctct 318  Q
    ||||||||||| |||||||||||||  ||||||| |||||| ||||| | ||||| ||||||||||||| |||||| |||||    
T  12442256 ggtgtcttttagggtgtttattttcccgtgttccgcctatagacgacgcctttagtttgtattctctgattcaccgatctct 12442175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 305
Target Start/End: Original strand, 15906998 - 15907105
Alignment:
Q  198 ggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgta 297  Q
    |||||||||||||||||| |||||| | |||||| ||  ||||| || | ||| ||||||| |||| || ||| |||||||||||  | ||||| |||||    
T  15906998 ggtgttgaaggtagggttgggctaggtgttgtgtgtaggggtgttttgtttggagtttattgtcggatgctccgcctatatacgatgcctttagtttgta 15907097  T
Q  298 ttctctga 305  Q
    ||||||||    
T  15907098 ttctctga 15907105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 10248378 - 10248327
Alignment:
Q  139 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgt 190  Q
    ||||||||||||||||| |||||||||| | || |||||||| |||||||||    
T  10248378 tttcgtgaaggagtttgttttaggtggtgacgtgtattttggcgggtgttgt 10248327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 142 - 310
Target Start/End: Complemental strand, 843 - 675
Alignment:
Q  142 cgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatggtgt 241  Q
    |||||| |||| || |||||||||| |||||||||||||||  ||||||   ||  ||||||||||||| | ||||||||| | |||||| ||  | |||    
T  843 cgtgaaagagtctgttttaggtggtgatgtttattttggtgtatgttgtcctcatgggtgttgaaggtacgatttggctaggtgttgtgtgtagggatgt 744  T
Q  242 cttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcac 310  Q
    ||||||||||||||||||||||||||||||| ||||||||||   ||||| ||||||||||||||||||    
T  743 cttttatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtattctctgaatcac 675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 142 - 310
Target Start/End: Complemental strand, 38544564 - 38544396
Alignment:
Q  142 cgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatggtgt 241  Q
    |||||| |||| || |||||||||| |||||||||||||||  ||||||   ||  ||||||||||||| | ||||||||| | |||||| ||  | |||    
T  38544564 cgtgaaagagtctgttttaggtggtgatgtttattttggtgtatgttgtcctcatgggtgttgaaggtacgatttggctaggtgttgtgtgtagggatgt 38544465  T
Q  242 cttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcac 310  Q
    ||||||||||||||||||||||||||||||| ||||||||||   ||||| ||||||||||||||||||    
T  38544464 cttttatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtattctctgaatcac 38544396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 198 - 319
Target Start/End: Complemental strand, 41126243 - 41126122
Alignment:
Q  198 ggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgta 297  Q
    ||||||||||||||||| ||||||  | |||||| ||  ||||||||||||  ||||||||||||||||||| ||||||||||||  | ||||| |||||    
T  41126243 ggtgttgaaggtagggtatggctatgtgttgtgtgtaggggtgtcttttataatgtttattttcgggtgttctacctatatacgatgcctttagtttgta 41126144  T
Q  298 ttctctgaatcaccggtctctg 319  Q
    |||||||||||| |||||||||    
T  41126143 ttctctgaatcatcggtctctg 41126122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 38546930 - 38546863
Alignment:
Q  243 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcac 310  Q
    ||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  38546930 ttttatggtttttattttcggatgttccgcctatatacgacacatttagtttgtactctctgaatcac 38546863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 17033838 - 17033931
Alignment:
Q  138 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgt 231  Q
    |||||||||| |||| || |||||||||||||||||||||| |||| ||||||   ||| |||||||||||||||||||| |||| | ||||||    
T  17033838 gtttcgtgaaagagtatgttttaggtggtaatgtttattttcgtggatgttgtccccaggggtgttgaaggtagggtttgactagttgttgtgt 17033931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 32863288 - 32863234
Alignment:
Q  248 tggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctc 302  Q
    |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||    
T  32863288 tggtgtttattttcaggtgttccgcctatatacgacacatttagtttgtattctc 32863234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 27905760 - 27905840
Alignment:
Q  237 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctct 318  Q
    ||||||||||||||||||||||||  | ||||||||||||||||||| | | ||| ||||| ||||||| ||||||||||||    
T  27905760 ggtgtcttttatggtgtttattttttg-tgttccacctatatacgacgcctctagtttgtagtctctgattcaccggtctct 27905840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 16577573 - 16577643
Alignment:
Q  198 ggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgtt 268  Q
    ||||||||| ||||||| || |||||| |||||| ||  ||||||||||||| ||||||||||||||||||    
T  16577573 ggtgttgaaagtagggtatgactagatgttgtgtgtaggggtgtcttttatgatgtttattttcgggtgtt 16577643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 279
Target Start/End: Original strand, 42374414 - 42374554
Alignment:
Q  138 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatg 237  Q
    ||||||||||||| |||| |||||||||| |||||||| |||||||| |||||   ||  |||||||||| || | ||||  ||| |  ||||| ||       
T  42374414 gtttcgtgaaggaatttgttttaggtggtgatgtttatcttggtgggggttgtccccaagggtgttgaagttatgctttgattaggtgctgtgtgtacga 42374513  T
Q  238 gtgtcttttatggtgtttattttcgggtgttccacctatata 279  Q
    ||||| |||||| |||||||||||||||||||| ||||||||    
T  42374514 gtgtc-tttatgatgtttattttcgggtgttccgcctatata 42374554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 9313087 - 9313031
Alignment:
Q  243 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtatt 299  Q
    ||||| |||||||||||||||||||||| |||||||||||| | ||| |||||||||    
T  9313087 ttttagggtgtttattttcgggtgttccgcctatatacgacgccttttgattgtatt 9313031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 26602669 - 26602545
Alignment:
Q  130 cagtgtttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgt 229  Q
    ||||| |||||| ||||| |||| ||  ||||||||| |||||||||||  ||||||||||   | | | ||||||||||||||||||||||| | ||||    
T  26602669 cagtggttgttttgtgaatgagtctgtgttaggtggtgatgtttattttcatgggtgttgtcctcggggttgttgaaggtagggtttggctaggtgttgt 26602570  T
Q  230 gtttaatggtgtcttttatggtgtt 254  Q
    || ||  ||||| |||| |||||||    
T  26602569 gtgtaggggtgtattttttggtgtt 26602545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 32882695 - 32882763
Alignment:
Q  237 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctga 305  Q
    ||||||||||| |||||||||||||||||||||  |||||||||| | | ||||| ||||||| |||||    
T  32882695 ggtgtcttttagggtgtttattttcgggtgttctgcctatatacggcgcctttagtttgtattttctga 32882763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 27102516 - 27102575
Alignment:
Q  243 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctc 302  Q
    ||||| |||||||||||||||||||||| |||||||||| ||| ||| | ||||||||||    
T  27102516 ttttagggtgtttattttcgggtgttccgcctatatacggcaccttttgtttgtattctc 27102575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 34775206 - 34775265
Alignment:
Q  243 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctc 302  Q
    ||||| |||||||||||||||||||||| |||||||||| | | ||||| ||||||||||    
T  34775206 ttttaaggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtattctc 34775265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 17033939 - 17034001
Alignment:
Q  254 ttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtct 316  Q
    ||||||||||||||||| | |||||||||| | ||| | ||||||| ||||||||||||||||    
T  17033939 ttattttcgggtgttccgcttatatacgacgccttttgtttgtattatctgaatcaccggtct 17034001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 37200362 - 37200422
Alignment:
Q  130 cagtgtttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgt 190  Q
    ||||| |||||||||| | ||| ||| |||||||||| ||||||||||| |||||||||||    
T  37200362 cagtggttgtttcgtggaagagcttgttttaggtggtgatgtttattttagtgggtgttgt 37200422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 319
Target Start/End: Original strand, 37200485 - 37200552
Alignment:
Q  252 gtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg 319  Q
    |||||||||||| |||||| |||||||||||    ||||| |||||||||| | ||||||||||||||    
T  37200485 gtttattttcggatgttccgcctatatacgatgtctttagtttgtattctcggtatcaccggtctctg 37200552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 38548889 - 38548838
Alignment:
Q  138 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttg 189  Q
    |||||||||| |||| || |||||||||| |||||||||||||||| |||||    
T  38548889 gtttcgtgaaagagtctgttttaggtggtgatgtttattttggtggatgttg 38548838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 16149106 - 16149148
Alignment:
Q  239 tgtcttttatggtgtttattttcgggtgttccacctatatacg 281  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||    
T  16149106 tgtcttttagggtgtttattttcgcgtgttccgcctatatacg 16149148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 16577529 - 16577579
Alignment:
Q  139 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttg 189  Q
    ||||||||| |||| || |||||||| | ||||||||||||||||||||||    
T  16577529 tttcgtgaaagagtctgttttaggtgatgatgtttattttggtgggtgttg 16577579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 316
Target Start/End: Original strand, 46603691 - 46603768
Alignment:
Q  240 gtcttttatggtgttt-attttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtct 316  Q
    |||||||||| ||||| ||||||||||||||| ||||||||| ||   ||| | ||||||| |||||| |||||||||    
T  46603691 gtcttttatgatgttttattttcgggtgttccgcctatatacaacgtcttttgtttgtattatctgaaccaccggtct 46603768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 6583003 - 6582971
Alignment:
Q  238 gtgtcttttatggtgtttattttcgggtgttcc 270  Q
    |||| ||||||||||||||||||||||||||||    
T  6583003 gtgttttttatggtgtttattttcgggtgttcc 6582971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 46768504 - 46768548
Alignment:
Q  237 ggtgtcttttatggtgtttattttcgggtgttccacctatatacg 281  Q
    ||||| ||||| |||||||||||||||||||||| |||| |||||    
T  46768504 ggtgttttttagggtgtttattttcgggtgttccgcctacatacg 46768548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 49820489 - 49820565
Alignment:
Q  243 ttttatggtgtttatttt-cgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctct 318  Q
    |||||||||||||||||| |||||||||| |||| ||| |||   ||| | ||||||||||||| |||||| |||||    
T  49820489 ttttatggtgtttattttccgggtgttccgcctacatatgacgtctttggtttgtattctctgattcaccgatctct 49820565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 138 - 319
Target Start/End: Complemental strand, 25594361 - 25594179
Alignment:
Q  138 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatg 237  Q
    |||| |||||||||| || ||||||| || ||||||||| |||||||||||||   ||  ||||||||||||| ||||||||||||| ||| ||  || |    
T  25594361 gttttgtgaaggagtatgttttaggtagtgatgtttattgtggtgggtgttgtcctcatgggtgttgaaggtatggtttggctagatgttgggtgcaagg 25594262  T
Q  238 gtgtctttt-atggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg 319  Q
    |||| |||| |||||||||| ||||||||||||| |||||||||||| |||||   || ||||||||||||||||| ||||||    
T  25594261 gtgtttttttatggtgtttactttcgggtgttccgcctatatacgacgcattttatttttattctctgaatcaccgatctctg 25594179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 130 - 319
Target Start/End: Complemental strand, 823257 - 823068
Alignment:
Q  130 cagtgtttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgt 229  Q
    ||||| |||||| |||| |||||||| |||||||||| | ||| ||||||||||||| |||   ||  |||||||||||||||| |||  |||   ||||    
T  823257 cagtggttgttttgtgatggagtttgttttaggtggtgaagttaattttggtgggtgatgtcctcatgggtgttgaaggtaggggttgattaggggttgt 823158  T
Q  230 gtttaatggtgtctttt-atggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg 319  Q
    || ||| |||||||||| |||||||||| ||| ||||||||| | |||||||||| | ||||  ||||| |||||||||||||||||||||    
T  823157 gtgtaagggtgtctttttatggtgtttaattt-gggtgttccccttatatacgacgcctttaacttgtagtctctgaatcaccggtctctg 823068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 198 - 322
Target Start/End: Complemental strand, 45354700 - 45354576
Alignment:
Q  198 ggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgta 297  Q
    ||||||||||||||||||||||||| |  ||||| ||  ||||||||||||| ||||||||||||| | |||| ||| ||||| |||| ||||  |||||    
T  45354700 ggtgttgaaggtagggtttggctaggtgctgtgtgtaggggtgtcttttatgatgtttattttcggatattccgcctctatacaacacctttaatttgta 45354601  T
Q  298 ttctctgaatcaccggtctctgctc 322  Q
    |||||| ||||| ||||||||||||    
T  45354600 ttctctaaatcatcggtctctgctc 45354576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 32010117 - 32010197
Alignment:
Q  239 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg 319  Q
    ||||||||| ||||||||||||| ||| |||| |||||||||||| | ||||| |||||||||||||||||||| ||||||    
T  32010117 tgtcttttaaggtgtttattttcaggtattccgcctatatacgacgcttttaggttgtattctctgaatcaccgatctctg 32010197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 198 - 319
Target Start/End: Complemental strand, 40689524 - 40689402
Alignment:
Q  198 ggtgttgaaggtagggtttggc-tagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgt 296  Q
    |||||||||||||||||||||| ||||  |||||| ||| | ||||||||||| | |||||||| ||||||| | | ||||||| |||| ||||| ||||    
T  40689524 ggtgttgaaggtagggtttggcctagaagttgtgtgtaaggatgtcttttatgatatttatttttgggtgtttcgcttatatacaacacttttagtttgt 40689425  T
Q  297 attctctgaatcaccggtctctg 319  Q
    | ||||| || ||||||||||||    
T  40689424 actctcttaaccaccggtctctg 40689402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 120 - 280
Target Start/End: Original strand, 27399195 - 27399359
Alignment:
Q  120 atatggtttacagtgtttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggc 219  Q
    |||| |||| ||||| | ||| ||||||||||  || |||||||| | |||||||||||||||||||||||   ||  |||||||||||| | | |||||    
T  27399195 atatcgttttcagtggtcgttgcgtgaaggagcctgttttaggtgatgatgtttattttggtgggtgttgtcctcatgggtgttgaaggtcgagcttggc 27399294  T
Q  220 tagatcttgtgtttaatggtgtcttt----tatggtgtttattttcgggtgttccacctatatac 280  Q
    ||  | |||||| |||  ||||||||    ||||||||||||||| ||||||| |||||||||||    
T  27399295 taagtgttgtgtgtaagtgtgtcttttatatatggtgtttatttttgggtgtttcacctatatac 27399359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 50518836 - 50518760
Alignment:
Q  243 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg 319  Q
    ||||| |||||||||||||||||||||| |||||||||||||| ||| | |||||||||| |  ||||| |||||||    
T  50518836 ttttagggtgtttattttcgggtgttccgcctatatacgacaccttttgtttgtattctcagtttcaccagtctctg 50518760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 4171078 - 4171154
Alignment:
Q  243 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg 319  Q
    ||||| ||||||||||||| |||||||| |||||||||||| | ||| | |||||||||| |  |||||||||||||    
T  4171078 ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtattctcagtttcaccggtctctg 4171154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 319
Target Start/End: Complemental strand, 46358135 - 46358053
Alignment:
Q  237 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg 319  Q
    ||||||||||| ||||||||||||| |||||| | |||||||||  |   ||||| ||||||| |||||||| | ||||||||    
T  46358135 ggtgtcttttaaggtgtttattttcaggtgtttcgcctatatacagcgtctttagtttgtattttctgaatctctggtctctg 46358053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 319
Target Start/End: Original strand, 8731168 - 8731348
Alignment:
Q  138 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgtt-gttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaat 236  Q
    |||||||||| || | || |||||||||| ||||||||||||||||||||| ||   ||| |||||||||||| ||||||| |||| | |||||| ||      
T  8731168 gtttcgtgaaagactctgttttaggtggtgatgtttattttggtgggtgtttgtcatcaggggtgttgaaggtggggtttgactaggtgttgtgtgtagg 8731267  T
Q  237 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg 319  Q
    || ||||||| ||||||||||||| ||||||| |  ||||||||| | | ||| | |||||||||||||||||||||| ||||    
T  8731268 gg-gtctttt-tggtgtttatttttgggtgtttcgtctatatacggcgccttttgtttgtattctctgaatcaccggtttctg 8731348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 24072053 - 24071935
Alignment:
Q  198 ggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgta 297  Q
    |||||||||||||||||||| |||| | ||  || ||  ||||||||||||| |||||||||||||||||||| |||||||||| | |  |||| |||||    
T  24072053 ggtgttgaaggtagggtttgactaggtgttacgtgtagaggtgtcttttatgatgtttattttcgggtgttccgcctatatacggcgcccttagtttgta 24071954  T
Q  298 ttctctgaatcaccggtct 316  Q
    || ||||||||| ||||||    
T  24071953 ttatctgaatcatcggtct 24071935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 23426646 - 23426716
Alignment:
Q  255 tattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctgctcctc 325  Q
    |||||||||||||||| |||||||||| ||| |||   ||||||||||||||||||||||||||| |||||    
T  23426646 tattttcgggtgttccgcctatatacggcaccttttagttgtattctctgaatcaccggtctctgttcctc 23426716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 270
Target Start/End: Complemental strand, 17853884 - 17853753
Alignment:
Q  138 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatg 237  Q
    ||||||| ||||||| || |||||  ||| ||||||||||||||||||||| |   ||  |||| |||||||||||||||||||| | |||||  ||  |    
T  17853884 gtttcgtaaaggagtctgttttagaaggtgatgtttattttggtgggtgttttcctcatgggtggtgaaggtagggtttggctaggtgttgtgagtatgg 17853785  T
Q  238 gtgtcttttatggtgtttattttcgggtgttcc 270  Q
     ||| |||||||||||||| |||||||||||||    
T  17853784 atgttttttatggtgttta-tttcgggtgttcc 17853753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 26405295 - 26405222
Alignment:
Q  243 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtct 316  Q
    ||||| ||||||||||||||||||||||  ||||||||||| | ||| | |||||||||| |  ||||||||||    
T  26405295 ttttaaggtgtttattttcgggtgttccgactatatacgacgccttttgtttgtattctcagtttcaccggtct 26405222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 30097602 - 30097653
Alignment:
Q  139 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgt 190  Q
    |||||||||||||| || |||||||||| | || ||||||||||||||||||    
T  30097602 tttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgt 30097653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 281
Target Start/End: Original strand, 30097667 - 30097705
Alignment:
Q  243 ttttatggtgtttattttcgggtgttccacctatatacg 281  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  30097667 ttttagggtgtttattttcgggtgttccgcctatatacg 30097705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 33258636 - 33258598
Alignment:
Q  243 ttttatggtgtttattttcgggtgttccacctatatacg 281  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  33258636 ttttatggtgtttattttcgggtgtttcacatatatacg 33258598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 39184016 - 39183939
Alignment:
Q  138 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtt 215  Q
    |||||||||  |||| || |||||||||| || |||||||| |||||||||||   ||  ||||||||||||||||||    
T  39184016 gtttcgtgatagagtctgttttaggtggtgatctttattttagtgggtgttgtcctcaagggtgttgaaggtagggtt 39183939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 7195108 - 7195048
Alignment:
Q  143 gtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgtt 203  Q
    |||||||||| || |||||||||| | || ||||||||||||||||||  |||| ||||||    
T  7195108 gtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgtccgcagcggtgtt 7195048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 319
Target Start/End: Complemental strand, 25504739 - 25504559
Alignment:
Q  138 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgtt-gttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaat 236  Q
    |||||||||| || | || |||||||||| ||||||||||||||||||||| ||   ||| |||||||||||| ||||||| |||| | |||||| ||      
T  25504739 gtttcgtgaaagactctgttttaggtggtgatgtttattttggtgggtgtttgtcatcaggggtgttgaaggtggggtttgactaggtgttgtgtgtagg 25504640  T
Q  237 ggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg 319  Q
    || ||||||| ||||||||||||| ||||||| |  ||||||||| | | ||| | |||||||||||||||||||||| ||||    
T  25504639 gg-gtctttt-tggtgtttatttttgggtgtttcgtctatatacggcgccttttgtttgtattctctgaatcaccggtttctg 25504559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 198 - 319
Target Start/End: Original strand, 20572362 - 20572482
Alignment:
Q  198 ggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgta 297  Q
    ||||||||||||||||| ||  ||  | |||||| ||  |||||||||||||||||||||||| | ||||| |||||||||||||||||||| | || ||    
T  20572362 ggtgttgaaggtagggtatgagtaagtgttgtgtgtaggggtgtcttttatggtgtttatttt-gagtgtttcacctatatacgacacattttgtttcta 20572460  T
Q  298 ttctctgaatcaccggtctctg 319  Q
    |||||||||||| |||||||||    
T  20572461 ttctctgaatcatcggtctctg 20572482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 138 - 303
Target Start/End: Complemental strand, 22884964 - 22884801
Alignment:
Q  138 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatg 237  Q
    ||||||||||||||| || |||||||||| ||||||  ||| |||||||||||   ||  |||||||||||| ||||| |||||| |  | ||  ||  |    
T  22884964 gtttcgtgaaggagtctgttttaggtggtgatgttt--tttagtgggtgttgtccacatgggtgttgaaggttgggttgggctaggtgctatgagtaggg 22884867  T
Q  238 gtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctct 303  Q
    |||| || ||||| ||||||||||||||||||| |||||||||||| | ||||| |||||||||||    
T  22884866 gtgttttgtatggagtttattttcgggtgttccgcctatatacgacgcctttagtttgtattctct 22884801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 319
Target Start/End: Complemental strand, 24308568 - 24308381
Alignment:
Q  136 ttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcag----tg-gtgttgaaggtagggtttggctagatcttgtg 230  Q
    ||||||| |||| || |||| |||||||| | ||||||||||||||||||||||| | ||     || |||||||| |||||||||| |||| | || ||    
T  24308568 ttgtttcatgaaagaatttgttttaggtgatgatgtttattttggtgggtgttgtcgtcatcagatgagtgttgaaagtagggtttgactaggtattctg 24308469  T
Q  231 tttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg 319  Q
    | ||  ||||||||||||| |||||| ||| | ||||||| | |||||||||  | ||||| ||||||||||| |||||||||||||||    
T  24308468 tgtag-ggtgtcttttatgatgtttacttttgagtgttcctcatatatacgatgcttttagtttgtattctctaaatcaccggtctctg 24308381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 316
Target Start/End: Complemental strand, 16952194 - 16952018
Alignment:
Q  139 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatgg 238  Q
    ||||||||||| || || |||| ||||| |||||||||||| |||||||||| | ||  |||||||||||||||   || |||| | |||||| ||   |    
T  16952194 tttcgtgaaggcgtctgttttaagtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggag 16952096  T
Q  239 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtct 316  Q
    ||||||||||| |||||||||| || |||||  ||||||||||||   | ||| ||||||||||| ||||||| ||||    
T  16952095 tgtcttttatgatgtttatttttggatgttctgcctatatacgacgtctatagtttgtattctctaaatcacctgtct 16952018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 316
Target Start/End: Complemental strand, 17022859 - 17022683
Alignment:
Q  139 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatgg 238  Q
    ||||||||||| || || |||| ||||| |||||||||||| |||||||||| | ||  |||||||||||||||   || |||| | |||||| ||   |    
T  17022859 tttcgtgaaggcgtctgttttaagtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggag 17022761  T
Q  239 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtct 316  Q
    ||||||||||| |||||||||| || |||||  ||||||||||||   | ||| ||||||||||| ||||||| ||||    
T  17022760 tgtcttttatgatgtttatttttggatgttctgcctatatacgacgtctatagtttgtattctctaaatcacctgtct 17022683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 13337584 - 13337660
Alignment:
Q  243 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg 319  Q
    ||||| ||||||||||||| ||||||||||||||||||||| | ||| | ||||||||||||  |||||||||||||    
T  13337584 ttttagggtgtttattttcaggtgttccacctatatacgacgccttttgtttgtattctctgtttcaccggtctctg 13337660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 27740325 - 27740388
Alignment:
Q  246 tatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatca 309  Q
    ||||| |||||||||||||||||||||||||||||||| | ||||| ||||||| |||||||||    
T  27740325 tatggagtttattttcgggtgttccacctatatacgacgcctttagtttgtattatctgaatca 27740388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 315
Target Start/End: Original strand, 2063175 - 2063285
Alignment:
Q  206 aggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgttta-ttttcgggtgttccacctatatacgacacatttagattgtattctctg 304  Q
    |||||||||||| |||| | |||||| ||  | |||||||||||||||||| |||||||||||| | |||||||||| ||| ||| | |||||||| |||    
T  2063175 aggtagggtttgactaggtgttgtgtgtagggatgtcttttatggtgtttatttttcgggtgtttcgcctatatacggcacctttcgtttgtattcgctg 2063274  T
Q  305 aatcaccggtc 315  Q
    ||| |||||||    
T  2063275 aattaccggtc 2063285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 4472277 - 4472346
Alignment:
Q  243 ttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccg 312  Q
    ||||||||||||||||||||| ||||||  ||||||||||| | ||||| ||||||||||||| ||||||    
T  4472277 ttttatggtgtttattttcggatgttccgtctatatacgacgcctttagtttgtattctctgattcaccg 4472346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 13699116 - 13698999
Alignment:
Q  138 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatg 237  Q
    ||||||| || |||| || |||||||||| ||||||||||||||||||||| |   ||| ||||||||||||||||||||  ||||| || ||||||  |    
T  13699116 gtttcgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtgttatcttcaggggtgttgaaggtagggtttgattagatgttatgtttaggg 13699017  T
Q  238 gtgtcttttatggtgttt 255  Q
    |  |||| ||||||||||    
T  13699016 ggatcttatatggtgttt 13698999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 44593969 - 44594076
Alignment:
Q  200 tgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtatt 299  Q
    ||||||||||||||| ||||||| | || ||| ||  || ||||||| |||||||||||||||| | ||||| ||||| ||||| | ||| | |||||||    
T  44593969 tgttgaaggtagggtgtggctaggtgttatgtgtaggggggtcttttttggtgtttattttcggatattccatctatacacgacgccttttgtttgtatt 44594068  T
Q  300 ctctgaat 307  Q
    ||||||||    
T  44594069 ctctgaat 44594076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 7696231 - 7696282
Alignment:
Q  139 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgt 190  Q
    ||||||||||||||||  |||||||||| |||| ||||||||||||||||||    
T  7696231 tttcgtgaaggagtttattttaggtggtgatgtgtattttggtgggtgttgt 7696282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 33788362 - 33788296
Alignment:
Q  253 tttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg 319  Q
    |||||||||||||||||| | |||||||| | | ||||| |||||||||| | ||||||||||||||    
T  33788362 tttattttcgggtgttccgcatatatacggcgcctttagtttgtattctcggtatcaccggtctctg 33788296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 33788470 - 33788385
Alignment:
Q  130 cagtgtttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtt 215  Q
    ||||| |||||||||| |||||  || ||||||||| |||||||||||| |||||||||||   ||  |||||||||||| |||||    
T  33788470 cagtggttgtttcgtggaggagcctgttttaggtggcaatgtttattttagtgggtgttgtactcatgggtgttgaaggttgggtt 33788385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 4975085 - 4975137
Alignment:
Q  249 ggtgtttattttcgggtgttccacctatatacgacacatttagattgtattct 301  Q
    |||||||||||||||||||||  |||||||||||| | ||||| |||||||||    
T  4975085 ggtgtttattttcgggtgttcagcctatatacgacgcctttagtttgtattct 4975137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 4992993 - 4993045
Alignment:
Q  249 ggtgtttattttcgggtgttccacctatatacgacacatttagattgtattct 301  Q
    |||||||||||||||||||||  |||||||||||| | ||||| |||||||||    
T  4992993 ggtgtttattttcgggtgttcagcctatatacgacgcctttagtttgtattct 4993045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 29487447 - 29487510
Alignment:
Q  255 tattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg 319  Q
    ||||||| |||||||| |||||||||| | | ||||| ||||||||| |||||||||||||||||    
T  29487447 tattttcaggtgttccgcctatatacggctcctttag-ttgtattctatgaatcaccggtctctg 29487510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 37770397 - 37770357
Alignment:
Q  243 ttttatggtgtttattttcgggtgttccacctatatacgac 283  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  37770397 ttttagggtgtttattttcgggtgttccgcctatatacgac 37770357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 41113549 - 41113502
Alignment:
Q  139 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtg 186  Q
    |||||||||||||| || ||||||| |||| |||||||||||||||||    
T  41113549 tttcgtgaaggagtctgttttaggtagtaacgtttattttggtgggtg 41113502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 10173328 - 10173270
Alignment:
Q  241 tcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtatt 299  Q
    ||||||| ||||||||||||| |||||||| ||||||||| || | ||||| |||||||    
T  10173328 tcttttagggtgtttattttcaggtgttccgcctatatacaacgcttttagtttgtatt 10173270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 6173970 - 6173925
Alignment:
Q  237 ggtgtcttttatggtgtttattttcgggtgttccacctatatacga 282  Q
    ||||||| || |||||||| |||| |||||||||||||||||||||    
T  6173970 ggtgtctcttttggtgtttgtttttgggtgttccacctatatacga 6173925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 15126240 - 15126187
Alignment:
Q  138 gtttcgtgaaggagtttggttt-aggtggtaatgtttattttggtgggtgttgt 190  Q
    |||||||||| ||||||| ||| ||||||| |||||||||||||||||| ||||    
T  15126240 gtttcgtgaacgagtttgtttttaggtggtgatgtttattttggtgggtattgt 15126187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 15360986 - 15361019
Alignment:
Q  157 tttaggtggtaatgtttattttggtgggtgttgt 190  Q
    |||||||||| |||||||||||||||||||||||    
T  15360986 tttaggtggtgatgtttattttggtgggtgttgt 15361019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 17060165 - 17060093
Alignment:
Q  139 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagg 212  Q
    ||||||||||| || || |||| ||||| ||||||||||| ||||||||||| | ||  |||||||||||||||    
T  17060165 tttcgtgaaggcgtctgttttaagtggtgatgtttatttt-gtgggtgttgtcgtcatgggtgttgaaggtagg 17060093  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 139 - 312
Target Start/End: Original strand, 23983474 - 23983647
Alignment:
Q  139 tttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatgg 238  Q
    ||||||||| |||| || ||||||||||  ||||||||||||||||||||||   ||   |||||||||||| ||| || |||| | |||||| ||  |     
T  23983474 tttcgtgaatgagtctgttttaggtggtggtgtttattttggtgggtgttgtcctcatgtgtgttgaaggtaaggtatgactaggtgttgtgtgtaggga 23983573  T
Q  239 tgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccg 312  Q
    ||||||||||| |||||||||| || || ||| |||||||||||  | ||||  ||||||||||||||||||||    
T  23983574 tgtcttttatgatgtttatttttggatgctccgcctatatacgatgcctttaatttgtattctctgaatcaccg 23983647  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 28534341 - 28534248
Alignment:
Q  138 gtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgt 231  Q
    |||||||||| |||| || |||||||||| |||||||||||||||||||||||   ||| ||||||||||||||||||||||||| | ||||||    
T  28534341 gtttcgtgaaagagtctgttttaggtggtgatgtttattttggtgggtgttgtcctcaggggtgttgaaggtagggtttggctagttgttgtgt 28534248  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 144 - 318
Target Start/End: Complemental strand, 31409807 - 31409632
Alignment:
Q  144 tgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtct 243  Q
    ||||||||| || |||| ||| | ||||||||||||| |||||||||   ||  | |||| ||| || || |||||||| | |||||  || ||||||||    
T  31409807 tgaaggagtctgttttatgtgatgatgtttattttggagggtgttgtcctcatggatgttaaagatatggattggctaggtgttgtgggtagtggtgtct 31409708  T
Q  244 tttatggtgtttattttcgggtgttccacctatatacgaca-catttagattgtattctctgaatcaccggtctct 318  Q
    || |||||||||||||||  |||||||||||||||||| || | ||||| ||||||| ||| ||||| | ||||||    
T  31409707 ttaatggtgtttattttcatgtgttccacctatatacgccatcttttagcttgtattatcttaatcatcagtctct 31409632  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 22567950 - 22567849
Alignment:
Q  130 cagtgtttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatcttgt 229  Q
    ||||| |||||||||||| |||| || |||||||||| |||| ||||||||||| ||||||    || |||||||||||||||||||| |||| | ||||    
T  22567950 cagtggttgtttcgtgaaagagtctgttttaggtggtgatgtgtattttggtggatgttgtccctaggggtgttgaaggtagggtttgactaggtgttgt 22567851  T
Q  230 gt 231  Q
    ||    
T  22567850 gt 22567849  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 10621123 - 10621064
Alignment:
Q  21 gcatcttctaccttaaataaatattaatctttgtttccaatcgatgagttggatttcttagat 83  Q
    ||||||||||| ||||||||| |   |||||||||||||||||||||||||||||||||||||    
T  10621123 gcatcttctactttaaataaaca---atctttgtttccaatcgatgagttggatttcttagat 10621064  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 281
Target Start/End: Original strand, 3478679 - 3478721
Alignment:
Q  239 tgtcttttatggtgtttattttcgggtgttccacctatatacg 281  Q
    ||||||||| |||||||||||||||||||||| ||||||||||    
T  3478679 tgtcttttagggtgtttattttcgggtgttccgcctatatacg 3478721  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 319
Target Start/End: Complemental strand, 9427930 - 9427749
Alignment:
Q  140 ttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgttgttggcagtggtgttgaaggtagggtttggctagatctt-gtgtttaatgg 238  Q
    |||||||| || |||| ||||||| || |||||||||||||| ||||||||   |   |||||| ||||||||||| |||||| | || | |  ||  ||    
T  9427930 ttcgtgaaagaatttgttttaggtagtgatgtttattttggtaggtgttgtcctcgtgggtgttaaaggtagggttgggctaggtttttgggcgtatggg 9427831  T
Q  239 tgtcttt-tatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg 319  Q
    ||| ||| ||||| ||||||||| || | |||| ||||||||||   ||||||| ||||||||||| |||||||| ||||||    
T  9427830 tgtttttgtatggagtttatttttggatattccgcctatatacgttgcatttagtttgtattctctaaatcaccgatctctg 9427749  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 16828839 - 16828774
Alignment:
Q  251 tgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtct 316  Q
    |||||||||||||||||||| |||||||||| | ||||| | |||||||||| |  ||||||||||    
T  16828839 tgtttattttcgggtgttccgcctatatacggcgcattttgtttgtattctcagtttcaccggtct 16828774  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 28534240 - 28534175
Alignment:
Q  254 ttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctctg 319  Q
    ||||||||||||||||| |||||||||| | | |||   ||||||||||| |||||||||||||||    
T  28534240 ttattttcgggtgttccgcctatatacggcgccttttatttgtattctctaaatcaccggtctctg 28534175  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 13312180 - 13312237
Alignment:
Q  252 gtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatca 309  Q
    ||||||||||||||||||| ||||||||| |  | ||||| ||||||| |||||||||    
T  13312180 gtttattttcgggtgttccgcctatatacaaagcctttagtttgtattatctgaatca 13312237  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 48058476 - 48058443
Alignment:
Q  157 tttaggtggtaatgtttattttggtgggtgttgt 190  Q
    |||||||||| |||||||||||||||||||||||    
T  48058476 tttaggtggtgatgtttattttggtgggtgttgt 48058443  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 310
Target Start/End: Original strand, 9107440 - 9107552
Alignment:
Q  198 ggtgttgaaggtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgta 297  Q
    |||||||||||||| |||||||||| | |||||| |   | |||||||||||||||| ||||| | | ||||| ||| |||||| | | |||   |||||    
T  9107440 ggtgttgaaggtagagtttggctaggtgttgtgtgttgggatgtcttttatggtgttcatttttgtgcgttccgcctttatacggcgcctttgatttgta 9107539  T
Q  298 ttctctgaatcac 310  Q
    |||| ||||||||    
T  9107540 ttctttgaatcac 9107552  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 319
Target Start/End: Original strand, 46487579 - 46487690
Alignment:
Q  208 gtagggtttggctagatcttgtgtttaatggtgtcttttatggtgtttattttcgggtgttccacctatatacgacacatttagattgtattctctgaat 307  Q
    |||||||||| |||| | |||||| ||  |||| | ||||| |||||||||||||| |||||| |||||||||||  | ||||| ||||||||||| |||    
T  46487579 gtagggtttgtctaggtgttgtgtgtaggggtgccatttattgtgtttattttcggatgttccgcctatatacgatgcctttagtttgtattctctaaat 46487678  T
Q  308 caccggtctctg 319  Q
    ||||||||||||    
T  46487679 caccggtctctg 46487690  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 253 - 318
Target Start/End: Original strand, 12296518 - 12296583
Alignment:
Q  253 tttattttcgggtgttccacctatatacgacacatttagattgtattctctgaatcaccggtctct 318  Q
    |||||||| ||||||||  ||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  12296518 tttatttttgggtgttctgcctgtatacgacacatttagtttgtattctctgaatcatcggtctct 12296583  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 39420788 - 39420741
Alignment:
Q  238 gtgtcttttatggtgtttattttcgggtgttccacctatatacgacac 285  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||||    
T  39420788 gtgttttttatggtgttcattttcgggtgttccgcctatatacgacac 39420741  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 20632233 - 20632170
Alignment:
Q  255 tattttcgggtgttccacctatatacgacacattt-agattgtattctctgaatcaccggtctc 317  Q
    ||||||||||| |||| ||||||||| || | ||| || |||||||||||||||||||||||||    
T  20632233 tattttcgggtattccgcctatatacaacgccttttagtttgtattctctgaatcaccggtctc 20632170  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 281
Target Start/End: Original strand, 38930122 - 38930161
Alignment:
Q  243 ttttatggtgtttatttt-cgggtgttccacctatatacg 281  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  38930122 ttttatggtgtttatttttcgggtgttccacctatatacg 38930161  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 41117723 - 41117676
Alignment:
Q  235 atggtgtcttttatggtgtttattttcgggtgttccacctatatacga 282  Q
    |||||||  |||| |||||||||||||||||||||| |||||||||||    
T  41117723 atggtgttatttagggtgtttattttcgggtgttccgcctatatacga 41117676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 12296446 - 12296479
Alignment:
Q  157 tttaggtggtaatgtttattttggtgggtgttgt 190  Q
    |||||||||| |||||||||||||||||||||||    
T  12296446 tttaggtggtgatgtttattttggtgggtgttgt 12296479  T

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Target: scaffold0050 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 37035 - 37078
Alignment:
Q  237 ggtgtcttttatggtgtttattttcgggtgttccacctatatac 280  Q
    ||||| ||||||||||||||||||||| |||||| |||||||||    
T  37035 ggtgttttttatggtgtttattttcggatgttccgcctatatac 37078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 36963 - 37024
Alignment:
Q  126 tttacagtgtttgtttcgtgaaggagtttggtttaggtggtaatgtttattttggtgggtgt 187  Q
    ||||||||| | ||||||||||||||| || |||||||||| | || ||||||| |||||||    
T  36963 tttacagtggtggtttcgtgaaggagtctgttttaggtggtgacgtgtattttgttgggtgt 37024  T

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Target: scaffold0499 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 6829 - 6862
Alignment:
Q  157 tttaggtggtaatgtttattttggtgggtgttgt 190  Q
    |||||||||| |||||||||||||||||||||||    
T  6829 tttaggtggtgatgtttattttggtgggtgttgt 6862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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