View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16401_low_18 (Length: 242)
Name: NF16401_low_18
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16401_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 14673365 - 14673254
Alignment:
| Q |
112 |
atagtataataatgttttgtttgcattggttttcaaatcttccaaatacatggaaattgtggtttaaataaattattatactatagtaatctcaggctca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14673365 |
atagtataataatgttttgtttgcattggttttcaaatcttccaaatacatggaaattgtggtttaaataaattattatactatagtaatctcaggctca |
14673266 |
T |
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| Q |
212 |
attacaatttag |
223 |
Q |
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|| ||||||||| |
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| T |
14673265 |
atcacaatttag |
14673254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 14678743 - 14678632
Alignment:
| Q |
112 |
atagtataataatgttttgtttgcattggttttcaaatcttccaaatacatggaaattgtggtttaaataaattattatactatagtaatctcaggctca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14678743 |
atagtataataatgttttgtttgcattggttttcaaatcttccaaatacatggaaattgtggtttaaataaattattatactatagtaatctcaggctca |
14678644 |
T |
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| Q |
212 |
attacaatttag |
223 |
Q |
| |
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|| ||||||||| |
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| T |
14678643 |
atcacaatttag |
14678632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 14673521 - 14673415
Alignment:
| Q |
1 |
aatgagaaaagtcaaaataagactaatgtgtgtgtgtatatatattttgtttgcataggttttcaaatcttggaaatacttg-acatggggtttaaagtc |
99 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
14673521 |
aatgagaaaagtcaaaataagactaacgtgtgtgtgtatatatattttgtttgcataggttttcaaatcttggaaatacttgcaaatggggtttaaagtc |
14673422 |
T |
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| Q |
100 |
aaaataa |
106 |
Q |
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| ||||| |
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| T |
14673421 |
acaataa |
14673415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 14678899 - 14678793
Alignment:
| Q |
1 |
aatgagaaaagtcaaaataagactaatgtgtgtgtgtatatatattttgtttgcataggttttcaaatcttggaaatacttg-acatggggtttaaagtc |
99 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
14678899 |
aatgagaaaagtcaaaataagactaacgtgtgtgtgtatatatattttgtttgcataggttttcaaatcttggaaatacttgcaaatggggtttaaagtc |
14678800 |
T |
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| Q |
100 |
aaaataa |
106 |
Q |
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| ||||| |
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| T |
14678799 |
acaataa |
14678793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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