View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16401_low_2 (Length: 670)
Name: NF16401_low_2
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16401_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 414
Target Start/End: Original strand, 49759839 - 49760247
Alignment:
| Q |
11 |
gagcagcacagatactggtaaacatgtatcatctcattcaagtgtgcgatttctcacaacttgcttttctcgattagggatgctctacacctccacatgc |
110 |
Q |
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| T |
49759839 |
gagcaacacagatactggtaaacatgtatcatctcattcaagtgtgcgatttctcacaactttcttttctcgattagggatgctctacacctccacatgc |
49759938 |
T |
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| Q |
111 |
atccatcggaattgacaacaagtctatacttatcatatttgactaccttgtacgtagatcaaatttaatgaactagatgtccgagtggattgtaattaga |
210 |
Q |
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| T |
49759939 |
atccattggaattgacaacaagtctatacttatcatatttgactaccttgtacgtaggtcaaatttaatgaactagatgtccgagtggattgtaatcaga |
49760038 |
T |
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| Q |
211 |
atatatagtcgtttcggtcggaatgatg------tcgtcaatgtcgtgtcgtgtggatagagtgtaagaatctcatcttcatctnnnnnnnnntatccac |
304 |
Q |
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| T |
49760039 |
atatatagtcgtttcggttggaatgatgtcgtcatcgtcaatgtcatgtcgtgtggatagtgtgtaagaatctcatcttcatct-aaaaaaaatatccac |
49760137 |
T |
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| Q |
305 |
tgttcactnnnnnnntatccactttttacaattgggnnnnnnnnnncttcttcattgtgagggctcacaatgaaagtgactagagcagttgcttcggttg |
404 |
Q |
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| T |
49760138 |
tgttcactaaaaaaatatccactttttacaattgggaaaaaaaaaacttcttcattgtgagggctcacaatgaaagtgactagagcagttgcttcggttg |
49760237 |
T |
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| Q |
405 |
gacttactgg |
414 |
Q |
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| T |
49760238 |
gacttactgg |
49760247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 537 - 652
Target Start/End: Original strand, 49760320 - 49760434
Alignment:
| Q |
537 |
attagattatccttttttaacaaattaatttattttnnnnnnnntgaagaagggagaagttgtaacctgcaatgcaggtgcaacttctatgaaaaagaaa |
636 |
Q |
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| T |
49760320 |
attagattatccttttttaacaaattaatttattt-aaaaaaaatgaagaagggagaagttgtaacctgcaatgcaggtgcaacttctatgaaaaagaaa |
49760418 |
T |
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| Q |
637 |
attaagattgcagagt |
652 |
Q |
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| T |
49760419 |
attaagattgcggagt |
49760434 |
T |
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