View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16401_low_20 (Length: 237)
Name: NF16401_low_20
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16401_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 27559376 - 27559571
Alignment:
| Q |
17 |
aactgcgagatagccttttgggattgcatccacagtcttggaagatgaccttctaatatcaggtaaccggaatcccatattgttagttattatgagttgt |
116 |
Q |
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| T |
27559376 |
aactgcgagatagccttttgggattccatccacagtcttggaagatgaccttctaataccaggtaaccggaatcccatattgttagtt----------gt |
27559465 |
T |
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| Q |
117 |
acacacaaacaatgcaataacttgtgtataaaagagagaaatatttgaatttgtatgttgtgagttgcttgttttggtgatttagaatgtaatgatgagt |
216 |
Q |
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| T |
27559466 |
acacacaaacaatgcaataacttgtgtataaaagagagaaatatttgaatttgtatgttgtgagttgcttgttttggtgatttagaatgtaatgatgagt |
27559565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 27556515 - 27556687
Alignment:
| Q |
17 |
aactgcgagatagccttttgggattgcatccacagtcttggaa---gatgaccttctaatatcaggtaaccggaatcccatattgttagttattatgagt |
113 |
Q |
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||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||||||| ||||||| | || |||||||||||| ||||||||||| |
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| T |
27556515 |
aactgcgagatagccttttgggacttcatccacagccttggaagaggatgaccttctaataccaggtaagtgaaaacccatattgttaattattatgagt |
27556614 |
T |
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| Q |
114 |
tg-tacacacaaacaatg----caataacttgtgtataaaagagagaaatatttgaatttgtatgttgtgagt |
181 |
Q |
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| T |
27556615 |
tgcaacacactaacaatgaatacaacagcttttgtatgaaagaaagaaatatttgaatttgtattttgtgagt |
27556687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 27446144 - 27446104
Alignment:
| Q |
24 |
agatagccttttgggattgcatccacagtcttggaagatga |
64 |
Q |
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| T |
27446144 |
agatagccttttgggacttcatccacagccttggaagatga |
27446104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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