View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16401_low_21 (Length: 233)

Name: NF16401_low_21
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16401_low_21
NF16401_low_21
[»] chr7 (3 HSPs)
chr7 (13-145)||(44212830-44212959)
chr7 (146-214)||(4270176-4270244)
chr7 (144-189)||(39147882-39147927)
[»] scaffold0604 (1 HSPs)
scaffold0604 (40-142)||(7363-7462)
[»] chr2 (1 HSPs)
chr2 (145-214)||(14565192-14565261)
[»] chr8 (6 HSPs)
chr8 (78-145)||(45482939-45483005)
chr8 (182-214)||(10611258-10611290)
chr8 (145-188)||(10199097-10199140)
chr8 (136-191)||(38572212-38572267)
chr8 (145-188)||(38573094-38573137)
chr8 (152-214)||(15823251-15823313)
[»] chr6 (1 HSPs)
chr6 (146-214)||(19761564-19761632)
[»] chr1 (2 HSPs)
chr1 (98-142)||(48735030-48735074)
chr1 (148-188)||(45611158-45611198)
[»] chr4 (1 HSPs)
chr4 (145-186)||(45772162-45772203)
[»] chr3 (1 HSPs)
chr3 (143-188)||(44793702-44793747)


Alignment Details
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 44212959 - 44212830
Alignment:
Q  13 gaagaatatgggaaaaagaactagtgggaaactagctgtactgatgtgttacaaatgtgtgaattattactactctcgatgtttaagttttggagggtgt 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||||||    
T  44212959 gaagaaaatgggaaaaagaactagtgggaaactagctgtactgatgtgttacaaatgtgtgaatta---ctactctcaatgtttaagttttggagggtgt 44212863  T
Q  113 atctagcaaaaacaataaaaccaatatttttca 145  Q
    |||||||||||||||||||||||||||||||||    
T  44212862 atctagcaaaaacaataaaaccaatatttttca 44212830  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 4270176 - 4270244
Alignment:
Q  146 ggtggagtttaacatggaaaaggtaaaacctttcccaccatgggaagtgtgttttttgaccttagatat 214  Q
    ||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  4270176 ggtggagtttaacatgggaaaggtgaatcctttcccaccatgggaaatgtgttttttgaccttagatat 4270244  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 39147927 - 39147882
Alignment:
Q  144 caggtggagtttaacatggaaaaggtaaaacctttcccaccatggg 189  Q
    |||||||||||||||||||||||||  || | ||||||||||||||    
T  39147927 caggtggagtttaacatggaaaagggcaatcatttcccaccatggg 39147882  T

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Target: scaffold0604 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 7462 - 7363
Alignment:
Q  40 gaaactagctgtactgatgtgttacaaatgtgtgaattattactactctcgatgtttaagttttggagggtgtatctagcaaaaacaataaaaccaatat 139  Q
    |||||||| ||| |||||||||||| || | ||||||||   |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  7462 gaaactagttgtgctgatgtgttaccaaggggtgaatta---ctactctcaatgtttaagttttggggggtgtatccagcaaaaacaataaaaccaatat 7366  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 14565261 - 14565192
Alignment:
Q  145 aggtggagtttaacatggaaaaggtaaaacctttcccaccatgggaagtgtgttttttgaccttagatat 214  Q
    |||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  14565261 aggtggagtttaacatgggaaaggtgaatcctttcccaccatgggaaatgtgttttttgaccttagatat 14565192  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 45482939 - 45483005
Alignment:
Q  78 attactactctcgatgtttaagttttggagggtgtatctagcaaaaacaataaaaccaatatttttca 145  Q
    |||||||||||| ||||||||||||||| ||||||||| || ||||||||||||||||||||||||||    
T  45482939 attactactctcaatgtttaagttttgg-gggtgtatccagaaaaaacaataaaaccaatatttttca 45483005  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 10611258 - 10611290
Alignment:
Q  182 accatgggaagtgtgttttttgaccttagatat 214  Q
    |||||||||||||||||||||||||||||||||    
T  10611258 accatgggaagtgtgttttttgaccttagatat 10611290  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 10199140 - 10199097
Alignment:
Q  145 aggtggagtttaacatggaaaaggtaaaacctttcccaccatgg 188  Q
    |||||||||||||||||| |||||| || |||||||||||||||    
T  10199140 aggtggagtttaacatgggaaaggtgaatcctttcccaccatgg 10199097  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 38572212 - 38572267
Alignment:
Q  136 atatttttcaggtggagtttaacatggaaaaggtaaaacctttcccaccatgggaa 191  Q
    |||||||  |||||||||||||||||| |||||| || | ||||||||||||||||    
T  38572212 atattttgtaggtggagtttaacatgggaaaggtcaatcttttcccaccatgggaa 38572267  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 38573137 - 38573094
Alignment:
Q  145 aggtggagtttaacatggaaaaggtaaaacctttcccaccatgg 188  Q
    |||||||||||||||||| |||||| || |||||||||||||||    
T  38573137 aggtggagtttaacatgggaaaggtgaatcctttcccaccatgg 38573094  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 15823251 - 15823313
Alignment:
Q  152 gtttaacatggaaaaggtaaaacctttcccaccatgggaagtgtgttttttgaccttagatat 214  Q
    |||||||||||||||||| ||  |||||| |||||||||| |||| | ||||||||| |||||    
T  15823251 gtttaacatggaaaaggtgaattctttcctaccatgggaaatgtgatctttgacctttgatat 15823313  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 19761632 - 19761564
Alignment:
Q  146 ggtggagtttaacatggaaaaggtaaaacctttcccaccatgggaagtgtgttttttgaccttagatat 214  Q
    ||||||||||||||||| |||||| || | ||| |||||||| |||  || ||||||||||||||||||    
T  19761632 ggtggagtttaacatgggaaaggtgaatcattttccaccatgagaaaggtattttttgaccttagatat 19761564  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 48735074 - 48735030
Alignment:
Q  98 agttttggagggtgtatctagcaaaaacaataaaaccaatatttt 142  Q
    |||||||||||||||  | ||||||||||||||||||||||||||    
T  48735074 agttttggagggtgtcaccagcaaaaacaataaaaccaatatttt 48735030  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 45611198 - 45611158
Alignment:
Q  148 tggagtttaacatggaaaaggtaaaacctttcccaccatgg 188  Q
    |||||||||||||||||||||| || ||||| |||||||||    
T  45611198 tggagtttaacatggaaaaggttaatccttttccaccatgg 45611158  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 45772162 - 45772203
Alignment:
Q  145 aggtggagtttaacatggaaaaggtaaaacctttcccaccat 186  Q
    ||||||||||| ||||||||||||| || |||||||||||||    
T  45772162 aggtggagtttcacatggaaaaggttaatcctttcccaccat 45772203  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 44793702 - 44793747
Alignment:
Q  143 tcaggtggagtttaacatggaaaaggtaaaacctttcccaccatgg 188  Q
    |||||||||||||||||||||||| || || ||||| |||||||||    
T  44793702 tcaggtggagtttaacatggaaaatgtcaatccttttccaccatgg 44793747  T

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