View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16401_low_22 (Length: 232)
Name: NF16401_low_22
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16401_low_22 |
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| [»] scaffold1063 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 6942939 - 6943138
Alignment:
| Q |
15 |
tgaaatggaaaccatattgtcgacaacttgaagcaaaaatgacatctttccataagcatcacagtatccgtatgcttcatcaaaacctacaatatatggt |
114 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
6942939 |
tgaaattgaaaccatattgtcgacaacttgaagcaaaaatggcatctttccataagcatcacagtatccgtatgcttcatccaaagctacaatatatggt |
6943038 |
T |
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| Q |
115 |
agcaacaataacatgtcattatatccaaatacttctgagtaggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcagatgt |
214 |
Q |
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| T |
6943039 |
agcaacaataacatgtcattatatccaaatacttctgattaggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgt |
6943138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 6939764 - 6939963
Alignment:
| Q |
15 |
tgaaatggaaaccatattgtcgacaacttgaagcaaaaatgacatctttccataagcatcacagtatccgtatgcttcatcaaaacctacaatatatggt |
114 |
Q |
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| T |
6939764 |
tgaaattgaaaccatattgtcgacaacttgaagcaaaaatggcatctttccataagcatcacggtatccgtatgcttcatccaaacctacaatatatggt |
6939863 |
T |
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| Q |
115 |
agcaacaataacatgtcattatatccaaatacttctgagtaggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcagatgt |
214 |
Q |
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| T |
6939864 |
agcaacaataacatgtcattatatccaaatacttctgattaggctttctttgaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgt |
6939963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 6787698 - 6787655
Alignment:
| Q |
171 |
gtaacctgaaggatttttcaagtaattatctcatcagcagatgt |
214 |
Q |
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| T |
6787698 |
gtaatctgaaggatttttcaagtaattatctcatcagcggatgt |
6787655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 6787756 - 6787696
Alignment:
| Q |
22 |
gaaaccatattgtcgacaacttgaagca--aaaatgacatctttccataagcatcacagta |
80 |
Q |
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| T |
6787756 |
gaaaccatattgtcgacaacttcaaacagaaaaatggcatccttccataagcatcacagta |
6787696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1063 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold1063
Description:
Target: scaffold1063; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 3106 - 3037
Alignment:
| Q |
49 |
aaaaatgacatctttccataagcatcacagtatccgtatgcttcatcaaaacctacaatatatggtagca |
118 |
Q |
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| T |
3106 |
aaaaatggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaacatatggtagca |
3037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1063; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 3023 - 2963
Alignment:
| Q |
154 |
taggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcagatgt |
214 |
Q |
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| T |
3023 |
taggctttctttaaagtataactcgaaggatttttcaagtaattatctcatcagcggatgt |
2963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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