View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16401_low_26 (Length: 206)
Name: NF16401_low_26
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16401_low_26 |
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| [»] scaffold1063 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 6942967 - 6943138
Alignment:
| Q |
17 |
tgaagcaaaaatgacatctttccataagcatcacagtatccgtatgcttcatcaaaacctacaatatatggtagcaacaataacatgtcattatatccaa |
116 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6942967 |
tgaagcaaaaatggcatctttccataagcatcacagtatccgtatgcttcatccaaagctacaatatatggtagcaacaataacatgtcattatatccaa |
6943066 |
T |
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| Q |
117 |
atacttctgagtaggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcagatgt |
188 |
Q |
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| T |
6943067 |
atacttctgattaggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgt |
6943138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 6939792 - 6939963
Alignment:
| Q |
17 |
tgaagcaaaaatgacatctttccataagcatcacagtatccgtatgcttcatcaaaacctacaatatatggtagcaacaataacatgtcattatatccaa |
116 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6939792 |
tgaagcaaaaatggcatctttccataagcatcacggtatccgtatgcttcatccaaacctacaatatatggtagcaacaataacatgtcattatatccaa |
6939891 |
T |
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| Q |
117 |
atacttctgagtaggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcagatgt |
188 |
Q |
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| T |
6939892 |
atacttctgattaggctttctttgaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgt |
6939963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 6787698 - 6787655
Alignment:
| Q |
145 |
gtaacctgaaggatttttcaagtaattatctcatcagcagatgt |
188 |
Q |
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| T |
6787698 |
gtaatctgaaggatttttcaagtaattatctcatcagcggatgt |
6787655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1063 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold1063
Description:
Target: scaffold1063; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 3106 - 3037
Alignment:
| Q |
23 |
aaaaatgacatctttccataagcatcacagtatccgtatgcttcatcaaaacctacaatatatggtagca |
92 |
Q |
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| T |
3106 |
aaaaatggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaacatatggtagca |
3037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1063; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 3023 - 2963
Alignment:
| Q |
128 |
taggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcagatgt |
188 |
Q |
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| T |
3023 |
taggctttctttaaagtataactcgaaggatttttcaagtaattatctcatcagcggatgt |
2963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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