View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16401_low_5 (Length: 476)
Name: NF16401_low_5
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16401_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 456
Target Start/End: Original strand, 36798839 - 36799287
Alignment:
| Q |
16 |
atgacataatttaaacatgcatatatgtattttatgcatgtactttagttaaggcctttgatgctgaaatgaacatgatattcaattgcagtcatgctta |
115 |
Q |
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| T |
36798839 |
atgacataatttaaacatgcatatatgtattttatgcatgtactttagttaaggcctttgatgctgaaatgaacatgatattcaattgcagtcatgctta |
36798938 |
T |
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| Q |
116 |
catgtcaatcgctctcacaaagtcatgtccatcacattcacattaaaattaataacaaataacatgctgca----nnnnnnnnnnnaacggaaataacat |
211 |
Q |
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| T |
36798939 |
catgtcaatcgctctcacaaagtcatgtccatcacattcacattaaaattaataacaaataacatgctgcatttttttttttttttaacggaaataacat |
36799038 |
T |
|
| Q |
212 |
gcatgtannnnnnnaaataaaaagtttggacaaatttaaaattttctaaacagttcatcatgagatgtaatttattaatcaattgagttcaatcctttga |
311 |
Q |
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| T |
36799039 |
gcatgtatttttttaaataaaaagtttggacaaatttaaaattttctaaacagttcatcatgagatgtaatttattaatcaattgagttcaatcctttga |
36799138 |
T |
|
| Q |
312 |
tttgaaatgcatatttgtgtt----nnnnnnnnntcatttcaagaaattatagatcgaaagttagaaattacccaatgcttcacaaaagttcagcttgag |
407 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
36799139 |
tttgaaatgcatatttgtgttaaaaaaataaaaatcatttcaagaaattatagatcgaaagttagaaattacccaatgcttcataaaagttcagcatgag |
36799238 |
T |
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| Q |
408 |
tgccacttaagtacatagctgagttgtaacctaacattcacaccccatg |
456 |
Q |
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| T |
36799239 |
tgccactgaagtacatagctgagttgtaacctaacattcacaccccatg |
36799287 |
T |
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