View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16401_low_7 (Length: 454)
Name: NF16401_low_7
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16401_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 31 - 440
Target Start/End: Complemental strand, 13402301 - 13401879
Alignment:
| Q |
31 |
ttaaactctaatgggtgatattcaagttagtacaagtgtgtggaacaaaaagagtaacaacataaacggtattaaacaaa------------cactatca |
118 |
Q |
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| T |
13402301 |
ttaaattctaatgggtgatatttaagttagtacaagtgtgtggaacaaaaagagtaacaacataaacggtattaaacaaaaccccaaacaaacactatca |
13402202 |
T |
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| Q |
119 |
agggaaatctggcaaactcacttataagtgcaaaaacgaattggaaaaaagctgagtaccgagtgttcaaagcatttaatctggcgtaggaatcatctgt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13402201 |
agggaaatctggcaaactcacttataagtgcaaaaacgaattgtaaaaaagcagagtatcgagtgttcaaagcatttaatttggcgtaggaatcatctgt |
13402102 |
T |
|
| Q |
219 |
caacataaaatgatccaagtttcattcattccctgtaaaaccacagcaagtcttaaacaccctttcatgccaaacgat-cattgtcaaaacagacacgcg |
317 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||| | ||||||||| ||||||||||||||||||||| |
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| T |
13402101 |
caacataaaatgatccaagtttcatccattccatgtaaaaccacagcaagtcttaaacaccatttcgtaccaaacgatccattgtcaaaacagacacgcg |
13402002 |
T |
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| Q |
318 |
aataagtgcataaacaatgggttgaaccaccacctttaagaaccatatccatacctagattttaaacaaaaccaataaaacatatctatgtttgaaccca |
417 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13402001 |
aataactgcacaaacaatgggttgaaccaccacctttaagaaccatatccagacctagattttaaacaaaaccaataaaacatatctatgtttgaaccca |
13401902 |
T |
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| Q |
418 |
cgaccggctcaaatattacgatg |
440 |
Q |
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| T |
13401901 |
ggaccggctcaaatattacgatg |
13401879 |
T |
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