View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16401_low_8 (Length: 443)

Name: NF16401_low_8
Description: NF16401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16401_low_8
NF16401_low_8
[»] chr8 (14 HSPs)
chr8 (15-427)||(6275535-6275947)
chr8 (129-385)||(6333077-6333333)
chr8 (127-385)||(6425181-6425439)
chr8 (125-385)||(6322506-6322766)
chr8 (99-379)||(6290371-6290651)
chr8 (125-374)||(6364362-6364611)
chr8 (127-374)||(7460563-7460810)
chr8 (223-407)||(6371291-6371472)
chr8 (225-374)||(6353589-6353738)
chr8 (143-370)||(6392003-6392230)
chr8 (141-362)||(6264836-6265057)
chr8 (143-370)||(6411167-6411394)
chr8 (276-373)||(6458303-6458400)
chr8 (240-368)||(6452174-6452302)
[»] chr2 (2 HSPs)
chr2 (240-370)||(42694396-42694526)
chr2 (240-368)||(42687133-42687261)
[»] chr5 (1 HSPs)
chr5 (229-373)||(9603035-9603179)
[»] chr3 (2 HSPs)
chr3 (235-311)||(36743945-36744021)
chr3 (224-308)||(35722304-35722388)


Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 15 - 427
Target Start/End: Original strand, 6275535 - 6275947
Alignment:
Q  15 aaaatatgcattagcaagaggaatgtcttagaatcataaacaaatgaaaatttggatcaacatacttaagatataacatacataaagtgtttaaatagaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6275535 aaaatatgcattagcaagaggaatgtcttagaatcataaacaaatgaaaatttggatcaacatacttaagatataacatacataaagtgtttaaataaaa 6275634  T
Q  115 tataaaagcatataacctttcttagctggttttctgccggttctcccccttcgagggtaaggcaaggtgttggatcctccaataacgggacgagccaagc 214  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6275635 tataaaagcatataacctttcttagctggtttcctgccggttctccctcttcgagggtaaggcaaggtgttggatcctccaataacgggacgagccaagc 6275734  T
Q  215 ttgctttcttgtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgtt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6275735 ttgctttcttgtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgtt 6275834  T
Q  315 caactcttcttgtctatagtagactaatggaggtggtgtttcacttggaagatatgtctatatttatattttagttaatagtgtcaaattttggaaaatg 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6275835 caactcttcttgtctatagtagactaatggaggtggtgtttcacttggaagatatgtctatatttatattttagttaatagtgtcaaattttggaaaatg 6275934  T
Q  415 taagatatttaag 427  Q
    |||||||||||||    
T  6275935 taagatatttaag 6275947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 129 - 385
Target Start/End: Original strand, 6333077 - 6333333
Alignment:
Q  129 acctttcttagctggttttctgccggttctcccccttcgagggtaaggcaaggtgttggatcctccaataacgggacgagccaagcttgctttcttgtca 228  Q
    |||||| |||||  |||| ||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||||||    
T  6333077 accttttttagcatgtttcctgccggttctcccccttcgagggtaaggcaagttattggatcctccaacaacgggacgagccaagctttctttcttgtca 6333176  T
Q  229 ggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtc 328  Q
    ||||||||||  |||||||| |||||||||||||||||||| ||| ||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||    
T  6333177 ggatcacccaagtcattgtaaacatcgtagtcatagatcctatccgattctttgcgctcacccgttccatctcctcttaaagtcttcaattcttcttgtc 6333276  T
Q  329 tatagtagactaatggaggtggtgtttcacttggaagatatgtctatatttatattt 385  Q
    | |||||||||||||||| ||||||||| |||||||| || ||||||||||||||||    
T  6333277 tgtagtagactaatggagctggtgtttcgcttggaaggtacgtctatatttatattt 6333333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 127 - 385
Target Start/End: Original strand, 6425181 - 6425439
Alignment:
Q  127 taacctttcttagctggttttctgccggttctcccccttcgagggtaaggcaaggtgttggatcctccaataacgggacgagccaagcttgctttcttgt 226  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| ||| |||||| ||||| | | ||||  ||    
T  6425181 taaccttttttagctggttttctgcctgttctcccccttcgagggtaaggcaaggtgctcgatcctccaagaactggacgacccaaggtaggtttcgagt 6425280  T
Q  227 caggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttg 326  Q
    |||| ||||||| |||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||    
T  6425281 caggctcacccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttcttg 6425380  T
Q  327 tctatagtagactaatggaggtggtgtttcacttggaagatatgtctatatttatattt 385  Q
    ||||||||| || |||||||  ||||||||||||||||| |||||||| ||||||||||    
T  6425381 tctatagtacaccaatggagccggtgtttcacttggaaggtatgtctacatttatattt 6425439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 125 - 385
Target Start/End: Original strand, 6322506 - 6322766
Alignment:
Q  125 tataacctttcttagctggttttctgccggttctcccccttcgagggtaaggcaaggtgttggatcctccaataacgggacgagccaagcttgctttctt 224  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||| | |||    
T  6322506 tataaccttttttagctggtttcctgccggttctgccccttcgagggtaaggcaaggtgtcggatcctccaataacgggacgagccaagtgtgcgtactt 6322605  T
Q  225 gtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttct 324  Q
    ||||||||||||||  |||||||| ||||||||||||||||| || ||   ||| || ||||  || |||||||||||||||||||| ||||| ||||||    
T  6322606 gtcaggatcacccaagtcattgtaaacatcgtagtcatagattctatcgtgttccttgcgctgacccgttccatctcctcttaaagtcttcaattcttct 6322705  T
Q  325 tgtctatagtagactaatggaggtggtgtttcacttggaagatatgtctatatttatattt 385  Q
    | |||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||    
T  6322706 tctctatagtagactaatggagctggtgtttcacttggaaggtatgtctatatttttattt 6322766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 99 - 379
Target Start/End: Original strand, 6290371 - 6290651
Alignment:
Q  99 aagtgtttaaatagaatataaaagcatataacctttcttagctggttttctgccggttctcccccttcgagggtaaggcaaggtgttggatcctccaata 198  Q
    ||||||||||| ||| ||||||||  |||||||||||||||||||||  ||||||||||| ||||||||||||||||| ||  || | ||||| |||| |    
T  6290371 aagtgtttaaaaagagtataaaagtttataacctttcttagctggttccctgccggttcttccccttcgagggtaagggaaattgctcgatcccccaaga 6290470  T
Q  199 acgggacgagccaagcttgctttcttgtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccat 298  Q
    |   |||| |||||    | ||||  |||||| ||||| | |||||||||||||||||| ||||| || ||||||||||| || ||||||||||||||||    
T  6290471 atttgacgcgccaattgaggtttcgagtcaggctcacctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctgttccat 6290570  T
Q  299 ctcctcttaaagtgttcaactcttcttgtctatagtagactaatggaggtggtgtttcacttggaagatatgtctatattt 379  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||    
T  6290571 ctcctcttaaagtcttcaattcttcttgtctatagtacactaatggagctggtgtttcacttggaaggtatgtctatattt 6290651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 125 - 374
Target Start/End: Original strand, 6364362 - 6364611
Alignment:
Q  125 tataacctttcttagctggttttctgccggttctcccccttcgagggtaaggcaaggtgttggatcctccaataacgggacgagccaagcttgctttctt 224  Q
    ||||||||||   ||||| ||| |||||||||||||| |||||||||||||| | |||| | |||||||||| ||| ||||||||||| || || |||||    
T  6364362 tataacctttacgagctgctttcctgccggttctccctcttcgagggtaagggagggtgctagatcctccaacaacaggacgagccaaactagcgttctt 6364461  T
Q  225 gtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttct 324  Q
    |||   |||||||| ||||||||||||||| || ||||| || ||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||    
T  6364462 gtccacatcacccaaatcattgtagacatcataatcatatattctttcccattccttacgctctccagttccatctcctcttaaagtcttcaattcttct 6364561  T
Q  325 tgtctatagtagactaatggaggtggtgtttcacttggaagatatgtcta 374  Q
    ||||| ||||||||||| |||| |||||||||||||||||| ||||||||    
T  6364562 tgtctgtagtagactaaaggagctggtgtttcacttggaaggtatgtcta 6364611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 127 - 374
Target Start/End: Original strand, 7460563 - 7460810
Alignment:
Q  127 taacctttcttagctggttttctgccggttctcccccttcgagggtaaggcaaggtgttggatcctccaataacgggacgagccaagcttgctttcttgt 226  Q
    |||||||| |||| |||||||||||||||||| ||||||||||||||||||||| |    | |||||||  ||| |||||||||||||| ||||||| ||    
T  7460563 taaccttttttagatggttttctgccggttcttccccttcgagggtaaggcaagtttccaggtcctccagcaacaggacgagccaagctagctttctggt 7460662  T
Q  227 caggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttg 326  Q
    | ||||||||||  |||||||||||||| || ||||| || || |||||||| || |||||||| |||||||||||||||||||| ||||| ||||||||    
T  7460663 cgggatcacccaagtcattgtagacatcataatcatatattctgtcccattccttgcgctctcccgttccatctcctcttaaagtcttcaattcttcttg 7460762  T
Q  327 tctatagtagactaatggaggtggtgtttcacttggaagatatgtcta 374  Q
    ||| ||||| |||||||||| ||||||| |||||||||| ||||||||    
T  7460763 tctgtagtacactaatggagctggtgttgcacttggaaggtatgtcta 7460810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 223 - 407
Target Start/End: Original strand, 6371291 - 6371472
Alignment:
Q  223 ttgtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactctt 322  Q
    ||||| || ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||| ||||||||||    
T  6371291 ttgtctggttcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttccatctcctcttaaagtcttcaactctt 6371390  T
Q  323 cttgtctatagtagactaatggaggtggtgtttcacttggaagatatgtctatatttatattttagttaatagtgtcaaattttg 407  Q
    ||||||| |||||||||||||||| ||||||||||||| |||| |||||||| ||||   ||||| || ||||||||||||||||    
T  6371391 cttgtctgtagtagactaatggagctggtgtttcacttagaaggtatgtctacattt---ttttatttcatagtgtcaaattttg 6371472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 225 - 374
Target Start/End: Original strand, 6353589 - 6353738
Alignment:
Q  225 gtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttct 324  Q
    |||||| ||||||| |||||||||||||||||| ||||| || ||||||||||| || |||||||| |||||||||||||||||||| ||||| ||||||    
T  6353589 gtcaggctcacccaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttct 6353688  T
Q  325 tgtctatagtagactaatggaggtggtgtttcacttggaagatatgtcta 374  Q
    ||||| ||||| ||||||||||  ||||||||||||||||| ||||||||    
T  6353689 tgtctgtagtacactaatggagccggtgtttcacttggaaggtatgtcta 6353738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 143 - 370
Target Start/End: Original strand, 6392003 - 6392230
Alignment:
Q  143 gttttctgccggttctcccccttcgagggtaaggcaaggtgttggatcctccaataacgggacgagccaagcttgctttcttgtcaggatcacccacatc 242  Q
    |||||||||| ||||| ||||||||||||||||||||||   | ||||| |||| ||| ||||||  |||||  |  || | ||| || | ||||| |||    
T  6392003 gttttctgccagttcttccccttcgagggtaaggcaaggcagttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatc 6392102  T
Q  243 attgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtctatagtagactaat 342  Q
    |||||||||||| || ||||| || || |||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| | ||||    
T  6392103 attgtagacatcataatcatatattctgtcccattccttacgctctccagttccatctcctcttaaagtattcaattcttcttgtctgtagtacagtaat 6392202  T
Q  343 ggaggtggtgtttcacttggaagatatg 370  Q
    |||| ||||||||| ||| |||| ||||    
T  6392203 ggagctggtgtttcccttagaaggtatg 6392230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 141 - 362
Target Start/End: Original strand, 6264836 - 6265057
Alignment:
Q  141 tggttttctgccggttctcccccttcgagggtaaggcaaggtgttggatcctccaataacgggacgagccaagcttgctttcttgtcaggatcacccaca 240  Q
    |||||||||||| ||||| ||||| ||||| ||||| | | || | |||||||| | ||| ||||||||  |||||     |||||| || ||||||| |    
T  6264836 tggttttctgcccgttcttcccctacgaggataaggaaggctgctagatcctcccaaaactggacgagcgtagctttgacccttgtcggggtcacccaaa 6264935  T
Q  241 tcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtctatagtagacta 340  Q
    |||||||| ||||| || ||||| |  || ||||||||||| ||||| || |||||||||||||||||||| |||||||||  ||||||||||||||| |    
T  6264936 tcattgtaaacatcataatcataaactctgtcccattctttgcgctcccccgttccatctcctcttaaagtcttcaactctaattgtctatagtagacaa 6265035  T
Q  341 atggaggtggtgtttcacttgg 362  Q
     |||||  ||||||||||||||    
T  6265036 gtggagcaggtgtttcacttgg 6265057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 370
Target Start/End: Original strand, 6411167 - 6411394
Alignment:
Q  143 gttttctgccggttctcccccttcgagggtaaggcaaggtgttggatcctccaataacgggacgagccaagcttgctttcttgtcaggatcacccacatc 242  Q
    |||||||||| ||||| |||||||||||||||||||||| |   ||||| |||| ||| ||||||  |||||  |   | | ||| || | ||||| |||    
T  6411167 gttttctgccagttcttccccttcgagggtaaggcaaggcggctgatcccccaagaactggacgatacaagcaaggactttcgtctggttgacccaaatc 6411266  T
Q  243 attgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtctatagtagactaat 342  Q
    |||||||||||| || ||||| || || |||||| | ||||||||||| |||||||||||||||||||| ||||| |||||||   | ||||| ||||||    
T  6411267 attgtagacatcataatcatatattctgtcccataccttacgctctccagttccatctcctcttaaagtcttcaattcttctttgatgtagtacactaat 6411366  T
Q  343 ggaggtggtgtttcacttggaagatatg 370  Q
    ||  |||||| || ||||||||| ||||    
T  6411367 ggttgtggtgcttgacttggaaggtatg 6411394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 373
Target Start/End: Original strand, 6458303 - 6458400
Alignment:
Q  276 ttctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtctatagtagactaatggaggtggtgtttcacttggaagatatgtct 373  Q
    |||||| |||||||| |||||||||||||||| ||| | ||||||||||| |||||| |    |||||||| |||||||| |||||||||||| ||||    
T  6458303 ttctttgcgctctccagttccatctcctcttagagtctgcaactcttcttctctataatgatttaatggagctggtgtttgacttggaagatacgtct 6458400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 368
Target Start/End: Original strand, 6452174 - 6452302
Alignment:
Q  240 atcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtctatagtagact 339  Q
    |||||| || ||||| || || || ||||| ||||||||||| || ||||| |||||||||||||||| | | | ||||||||||| |||| |||    |    
T  6452174 atcattataaacatcataatcgtatatcctatcccattctttgcgttctccggttccatctcctcttagattctgcaactcttcttctctaaagtgattt 6452273  T
Q  340 aatggaggtggtgtttcacttggaagata 368  Q
    ||||||| |||||||| ||||||||||||    
T  6452274 aatggagctggtgtttgacttggaagata 6452302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 240 - 370
Target Start/End: Original strand, 42694396 - 42694526
Alignment:
Q  240 atcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtctatagtagact 339  Q
    ||||||||||||||| || |||||||| |||||||||||||| || |||||||||||||||||||||||| ||||||| ||||||| |||||| | ||||    
T  42694396 atcattgtagacatcataatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaattgttcaattcttcttctctataatggact 42694495  T
Q  340 aatggaggtggtgtttcacttggaagatatg 370  Q
    |||||||  ||||||||||| ||||||||||    
T  42694496 aatggagccggtgtttcactaggaagatatg 42694526  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 368
Target Start/End: Complemental strand, 42687261 - 42687133
Alignment:
Q  240 atcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtctatagtagact 339  Q
    |||||||||||||||||| || |||||||||||   |   || |||||||||||||||||||| |||||| | | ||| ||||||| |||||| | ||||    
T  42687261 atcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttcttctctatacttgact 42687162  T
Q  340 aatggaggtggtgtttcacttggaagata 368  Q
    | ||||| |||||||||||||||||||||    
T  42687161 agtggagatggtgtttcacttggaagata 42687133  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 229 - 373
Target Start/End: Complemental strand, 9603179 - 9603035
Alignment:
Q  229 ggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactcttcttgtc 328  Q
    |||||||| | ||||||||||||||| || ||||| |  |||||||||||||| || | ||| || ||||||||||||| | | | ||| ||||||||||    
T  9603179 ggatcaccaagatcattgtagacatcataatcataaactctttcccattcttttcgttgtccagtaccatctcctcttagattttgcaattcttcttgtc 9603080  T
Q  329 tatagtagactaatggaggtggtgtttcacttggaagatatgtct 373  Q
    | |||||||||||||||| |||||||| |||||||||||||||||    
T  9603079 tgtagtagactaatggagctggtgtttgacttggaagatatgtct 9603035  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 36744021 - 36743945
Alignment:
Q  235 cccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagt 311  Q
    |||| ||||||||| ||||| || |||||||| || |||||||| | ||||| | ||||||||||||| ||||||||    
T  36744021 cccaaatcattgtaaacatcataatcatagattctgtcccattcctcacgctttgctgttccatctccccttaaagt 36743945  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 35722388 - 35722304
Alignment:
Q  224 tgtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaa 308  Q
    |||||||||| || | ||||||||||||||| || |||||||| || ||  |||  ||||||||||||  ||||| |||||||||    
T  35722388 tgtcaggatctccaagatcattgtagacatcataatcatagattctgtctgatttcttacgctctccttctccatttcctcttaa 35722304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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