View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16402_high_12 (Length: 280)

Name: NF16402_high_12
Description: NF16402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16402_high_12
NF16402_high_12
[»] chr2 (10 HSPs)
chr2 (18-270)||(45166248-45166496)
chr2 (194-244)||(18570979-18571029)
chr2 (194-244)||(31026702-31026752)
chr2 (192-240)||(22131254-22131302)
chr2 (192-245)||(4229408-4229461)
chr2 (192-229)||(14373427-14373464)
chr2 (194-239)||(45000848-45000893)
chr2 (200-244)||(12748691-12748735)
chr2 (194-230)||(37402086-37402122)
chr2 (193-245)||(44605140-44605192)
[»] chr7 (8 HSPs)
chr7 (194-244)||(2525846-2525896)
chr7 (192-244)||(36314627-36314679)
chr7 (196-244)||(38134410-38134458)
chr7 (194-244)||(20427637-20427687)
chr7 (194-243)||(24146824-24146873)
chr7 (195-254)||(16827639-16827696)
chr7 (187-243)||(17851439-17851495)
chr7 (200-244)||(44172898-44172942)
[»] chr4 (12 HSPs)
chr4 (194-244)||(56049884-56049933)
chr4 (192-244)||(18513241-18513293)
chr4 (194-245)||(25390888-25390939)
chr4 (197-244)||(14465299-14465346)
chr4 (191-230)||(40224497-40224536)
chr4 (194-240)||(3568852-3568898)
chr4 (192-242)||(11110212-11110262)
chr4 (194-243)||(33950144-33950193)
chr4 (191-244)||(43299970-43300023)
chr4 (191-244)||(43300623-43300676)
chr4 (200-244)||(5654599-5654643)
chr4 (196-244)||(24846782-24846830)
[»] chr3 (4 HSPs)
chr3 (194-244)||(20691326-20691376)
chr3 (194-244)||(40150573-40150623)
chr3 (191-240)||(23271993-23272042)
chr3 (194-230)||(27513664-27513700)
[»] chr1 (7 HSPs)
chr1 (194-244)||(19637775-19637825)
chr1 (194-243)||(31667433-31667482)
chr1 (215-254)||(1314203-1314242)
chr1 (192-243)||(30847720-30847771)
chr1 (191-254)||(11412767-11412827)
chr1 (191-243)||(1864879-1864931)
chr1 (183-243)||(38075961-38076021)
[»] chr5 (7 HSPs)
chr5 (192-244)||(14818303-14818354)
chr5 (194-245)||(17925174-17925225)
chr5 (193-244)||(19737483-19737534)
chr5 (134-162)||(36577616-36577644)
chr5 (192-244)||(38749563-38749615)
chr5 (194-254)||(40211953-40212013)
chr5 (192-240)||(43208274-43208322)
[»] chr6 (5 HSPs)
chr6 (194-241)||(9024178-9024225)
chr6 (194-243)||(9617442-9617491)
chr6 (194-242)||(9629392-9629440)
chr6 (196-240)||(10157995-10158039)
chr6 (194-230)||(32980979-32981015)
[»] scaffold0022 (1 HSPs)
scaffold0022 (194-244)||(99900-99950)
[»] scaffold0011 (1 HSPs)
scaffold0011 (194-244)||(240023-240073)
[»] chr8 (6 HSPs)
chr8 (194-244)||(12985399-12985449)
chr8 (195-244)||(3508059-3508108)
chr8 (203-243)||(29198490-29198530)
chr8 (195-243)||(31236580-31236628)
chr8 (194-230)||(31548295-31548331)
chr8 (202-246)||(34201056-34201100)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 45166248 - 45166496
Alignment:
Q  18 tttggtacccttagagcttggagggtcactcagagttacagaaccaatcggctcagaaaatcttcaatgatttnnnnnnnnnnnnnngtgttttatatgg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||    
T  45166248 tttggtacccttagagcttggagggtcactcagagttacagaaccaatcggctcagaaaatcttcaatgatttaaaaaaaaaa----gtgttttatatgg 45166343  T
Q  118 tagtatttgagccaatgaagcacagacacttcttggattaggcgttgtcccagcatcggacaaatatcgatgcccaacaccgacacatatgattacattg 217  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  45166344 tagtatttgagccaatgaagcacagacactccttggattaggcgttgtcccagcatcggacacatatcgatgcccaacaccgacacatatggttacattg 45166443  T
Q  218 aactatgtcatttgctaaaattattattatcggtgtcgcgcatagtatctgtg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45166444 aactatgtcatttgctaaaattattattatcggtgtcgcgcatagtatctgtg 45166496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 18571029 - 18570979
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    |||| ||||||||||||||||||||| |||||||||| || ||||||||||    
T  18571029 acactgacacatatgattacattgaattatgtcattttctcaaattattat 18570979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 31026752 - 31026702
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    ||||||||| |||||||||||||||| |||||||||| || ||||||||||    
T  31026752 acaccgacatatatgattacattgaattatgtcattttcttaaattattat 31026702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 22131254 - 22131302
Alignment:
Q  192 caacaccgacacatatgattacattgaactatgtcatttgctaaaatta 240  Q
    |||||||||||||| |||||||||||||| ||||||||| || ||||||    
T  22131254 caacaccgacacatgtgattacattgaacaatgtcattttctcaaatta 22131302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 4229408 - 4229461
Alignment:
Q  192 caacaccgacacatatgattacattgaactatgtcatttgctaaaattattatt 245  Q
    ||||| ||||||||||||||||| |||| |||||||||  || |||||||||||    
T  4229408 caacatcgacacatatgattacactgaattatgtcattctcttaaattattatt 4229461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 14373427 - 14373464
Alignment:
Q  192 caacaccgacacatatgattacattgaactatgtcatt 229  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  14373427 caacaccgacacatgtgattacattgaattatgtcatt 14373464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 45000848 - 45000893
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaatt 239  Q
    |||||||||||||||||||||||||| | |||||||| || |||||    
T  45000848 acaccgacacatatgattacattgaattgtgtcattttctcaaatt 45000893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 12748735 - 12748691
Alignment:
Q  200 acacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    |||| |||||||||| ||||||||||||||| || ||||||||||    
T  12748735 acacctatgattacactgaactatgtcattttctcaaattattat 12748691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 37402086 - 37402122
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcattt 230  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  37402086 acactgacacatatgattacattgaattatgtcattt 37402122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 44605140 - 44605192
Alignment:
Q  193 aacaccgacacatatgattacattgaactatgtcatttgctaaaattattatt 245  Q
    ||||||||||||| | ||||||||||| ||||| |||| || |||||||||||    
T  44605140 aacaccgacacatgtaattacattgaattatgttattttctcaaattattatt 44605192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 2525846 - 2525896
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  2525846 acaccgacacatatgattatattgaattatgtcatttgctcaaattattat 2525896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 36314627 - 36314679
Alignment:
Q  192 caacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    ||||||| |||||||||||||||||||| |||||||||| || ||||||||||    
T  36314627 caacaccaacacatatgattacattgaaatatgtcattttctcaaattattat 36314679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 38134410 - 38134458
Alignment:
Q  196 accgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    |||||||||||||||||||||||| |||||||||| || ||||||||||    
T  38134410 accgacacatatgattacattgaattatgtcattttctcaaattattat 38134458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 20427637 - 20427687
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    ||||||||||||||||||||||| || |||||||| | || ||||||||||    
T  20427637 acaccgacacatatgattacatttaaatatgtcatcttctcaaattattat 20427687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 24146873 - 24146824
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattatta 243  Q
    |||||||||||||| |||| |||||| ||||| |||| ||||||||||||    
T  24146873 acaccgacacatataattatattgaattatgtgattttctaaaattatta 24146824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 16827696 - 16827639
Alignment:
Q  195 caccgacacatatgattacattgaactatgtcatttgctaaaattattattatcggtgtc 254  Q
    |||| |||||| |||||||||||||  |||||||||||| |||||||  |||||||||||    
T  16827696 caccaacacatgtgattacattgaatcatgtcatttgctcaaattat--ttatcggtgtc 16827639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 17851495 - 17851439
Alignment:
Q  187 atgcccaacaccgacacatatgattacattgaactatgtcatttgctaaaattatta 243  Q
    ||||| ||||| ||||||||| |||||| |||| ||||| |||| ||||||||||||    
T  17851495 atgcctaacacagacacatataattacactgaattatgtgattttctaaaattatta 17851439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 44172898 - 44172942
Alignment:
Q  200 acacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    |||||| ||||||||||||| |||||||||| || ||||||||||    
T  44172898 acacatgtgattacattgaattatgtcattttctcaaattattat 44172942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 56049933 - 56049884
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  56049933 acaccgacacatatgattacattgaactatgtcattt-ctcaaattattat 56049884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 18513241 - 18513293
Alignment:
Q  192 caacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    |||||| ||||||||||||||||||||| |||||||||| || ||||||||||    
T  18513241 caacactgacacatatgattacattgaattatgtcattttctcaaattattat 18513293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 25390888 - 25390939
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattattatt 245  Q
    ||||||||||||||| ||| |||||| |||||||||| ||||||||||||||    
T  25390888 acaccgacacatatggttatattgaattatgtcattttctaaaattattatt 25390939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 14465299 - 14465346
Alignment:
Q  197 ccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    |||||||||||||||| |||||| |||||||||| || ||||||||||    
T  14465299 ccgacacatatgattaaattgaattatgtcattttctcaaattattat 14465346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 40224497 - 40224536
Alignment:
Q  191 ccaacaccgacacatatgattacattgaactatgtcattt 230  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  40224497 ccaacaccgacacatatgattacattaaattatgtcattt 40224536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 3568852 - 3568898
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaatta 240  Q
    ||||||||||||||||||  ||||||||||||||||| || ||||||    
T  3568852 acaccgacacatatgatttaattgaactatgtcattttctcaaatta 3568898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 11110262 - 11110212
Alignment:
Q  192 caacaccgacacatatgattacattgaactatgtcatttgctaaaattatt 242  Q
    ||||| |||||||||||||||||| ||| |||||||||| || ||||||||    
T  11110262 caacatcgacacatatgattacatcgaattatgtcattttctcaaattatt 11110212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 33950193 - 33950144
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattatta 243  Q
    ||||||||||||||||||||||| || ||||| |||| || |||||||||    
T  33950193 acaccgacacatatgattacattaaattatgtgattttctcaaattatta 33950144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 43299970 - 43300023
Alignment:
Q  191 ccaacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    ||||||||| || |||||||||||||||| ||||| |||| || ||||||||||    
T  43299970 ccaacaccggcagatatgattacattgaattatgtaattttctcaaattattat 43300023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 43300676 - 43300623
Alignment:
Q  191 ccaacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    |||||| ||||| |||||||||||||||| ||||| |||| || ||||||||||    
T  43300676 ccaacagcgacaaatatgattacattgaattatgtaattttctcaaattattat 43300623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 5654599 - 5654643
Alignment:
Q  200 acacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    |||| ||||||||||||||| |||||||||| || ||||||||||    
T  5654599 acacgtatgattacattgaattatgtcattttctcaaattattat 5654643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 24846782 - 24846830
Alignment:
Q  196 accgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    |||| ||||||||| |||| |||| ||||||||||||| ||||||||||    
T  24846782 accgtcacatatgagtacagtgaattatgtcatttgctcaaattattat 24846830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 20691376 - 20691326
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    ||||||||||||||||||||| |||| |||||||||| || ||||||||||    
T  20691376 acaccgacacatatgattacactgaattatgtcattttctcaaattattat 20691326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 40150573 - 40150623
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    |||||||||||||||||||||||||| ||| |||||| || ||||||||||    
T  40150573 acaccgacacatatgattacattgaattatatcattttctcaaattattat 40150623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 23271993 - 23272042
Alignment:
Q  191 ccaacaccgacacatatgattacattgaactatgtcatttgctaaaatta 240  Q
    |||||||||||||||||||||||||| || ||||||| || || ||||||    
T  23271993 ccaacaccgacacatatgattacattcaattatgtcagtttctcaaatta 23272042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 27513664 - 27513700
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcattt 230  Q
    ||||||||||||||||||||||||||  |||||||||    
T  27513664 acaccgacacatatgattacattgaataatgtcattt 27513700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 19637825 - 19637775
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    ||||||||||||||||||||||||||  ||||||||| || ||||||||||    
T  19637825 acaccgacacatatgattacattgaataatgtcattttcttaaattattat 19637775  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 31667482 - 31667433
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattatta 243  Q
    |||||||||||| |||||||||| || |||||||||| ||||||||||||    
T  31667482 acaccgacacatgtgattacatttaattatgtcattttctaaaattatta 31667433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 1314203 - 1314242
Alignment:
Q  215 ttgaactatgtcatttgctaaaattattattatcggtgtc 254  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  1314203 ttgaactatgtcatttacttaaattattattatcggtgtc 1314242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 30847720 - 30847771
Alignment:
Q  192 caacaccgacacatatgattacattgaactatgtcatttgctaaaattatta 243  Q
    |||||| ||||||||||||||||||||| ||||||||||  | |||||||||    
T  30847720 caacactgacacatatgattacattgaattatgtcattttttcaaattatta 30847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 11412767 - 11412827
Alignment:
Q  191 ccaacaccgacacatatgattacattgaactatgtcatttgctaaaattattattatcggtgtc 254  Q
    ||||||||||||| |||||| |||||||| |||||||||| || |   ||||||||||||||||    
T  11412767 ccaacaccgacacctatgatcacattgaattatgtcattttctca---tattattatcggtgtc 11412827  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 1864879 - 1864931
Alignment:
Q  191 ccaacaccgacacatatgattacattgaactatgtcatttgctaaaattatta 243  Q
    ||||||||||||||||| |||||| |||| ||||| |||| || |||||||||    
T  1864879 ccaacaccgacacatataattacactgaattatgtgattttctcaaattatta 1864931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 38075961 - 38076021
Alignment:
Q  183 atcgatgcccaacaccgacacatatgattacattgaactatgtcatttgctaaaattatta 243  Q
    ||||||| || ||||||||||||||||||||| |||  ||||| |||| || |||||||||    
T  38075961 atcgatgtccgacaccgacacatatgattacactgacttatgtgatttactcaaattatta 38076021  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 14818303 - 14818354
Alignment:
Q  192 caacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    ||||||||||||||||| |||||||||| |||||||||| || ||||||||||    
T  14818303 caacaccgacacatatgtttacattgaattatgtcattt-ctcaaattattat 14818354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 17925174 - 17925225
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattattatt 245  Q
    |||||||||||||| ||||||||||| ||||| |||| || |||||||||||    
T  17925174 acaccgacacatattattacattgaattatgtgattttcttaaattattatt 17925225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 19737483 - 19737534
Alignment:
Q  193 aacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    ||||||||||||||||||| ||||||| ||||| |||| || ||||||||||    
T  19737483 aacaccgacacatatgattgcattgaattatgtaattttctcaaattattat 19737534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 162
Target Start/End: Original strand, 36577616 - 36577644
Alignment:
Q  134 gaagcacagacacttcttggattaggcgt 162  Q
    |||||||||||||||||||||||||||||    
T  36577616 gaagcacagacacttcttggattaggcgt 36577644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 38749563 - 38749615
Alignment:
Q  192 caacaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    ||||||| |||||||| ||||||||||| ||||||||||  | ||||||||||    
T  38749563 caacaccaacacatataattacattgaattatgtcattttttcaaattattat 38749615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 40212013 - 40211953
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattattattatcggtgtc 254  Q
    ||||||| ||||||||||| |||||| ||||| |||| || || ||||||| |||||||||    
T  40212013 acaccgatacatatgattatattgaattatgtaattttctcaatttattatcatcggtgtc 40211953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 43208274 - 43208322
Alignment:
Q  192 caacaccgacacatatgattacattgaactatgtcatttgctaaaatta 240  Q
    |||||| |||| |||||||||||||||| |||||||||| || ||||||    
T  43208274 caacacagacagatatgattacattgaattatgtcattttctcaaatta 43208322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 9024178 - 9024225
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattat 241  Q
    |||| ||||||||||||||||||||| |||||||||| || |||||||    
T  9024178 acactgacacatatgattacattgaattatgtcattttctcaaattat 9024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 9617491 - 9617442
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattatta 243  Q
    |||||||||||||| ||||||||||| ||||| |||| || |||||||||    
T  9617491 acaccgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 9629440 - 9629392
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattatt 242  Q
    |||||||||||||| ||||||||||| ||||| |||| || ||||||||    
T  9629440 acaccgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 10158039 - 10157995
Alignment:
Q  196 accgacacatatgattacattgaactatgtcatttgctaaaatta 240  Q
    |||||||||| ||||||||||||| |||||||||| || ||||||    
T  10158039 accgacacatgtgattacattgaattatgtcattttctcaaatta 10157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 32981015 - 32980979
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcattt 230  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  32981015 acaccgacacatatgattatattgaattatgtcattt 32980979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 99950 - 99900
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    ||||| |||||||| ||||||||||| ||||| |||| |||||||||||||    
T  99950 acaccaacacatataattacattgaattatgttattttctaaaattattat 99900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 240023 - 240073
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    |||||||||||||||||||||||||| ||| | |||| || ||||||||||    
T  240023 acaccgacacatatgattacattgaattatattattttctcaaattattat 240073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 12985449 - 12985399
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    ||||||||| |||||||||||||||| ||||| |||| || ||||||||||    
T  12985449 acaccgacatatatgattacattgaattatgtgattttctcaaattattat 12985399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 3508108 - 3508059
Alignment:
Q  195 caccgacacatatgattacattgaactatgtcatttgctaaaattattat 244  Q
    |||| |||||||||||||||||||| ||||| |||| || ||||||||||    
T  3508108 caccaacacatatgattacattgaattatgttattttctcaaattattat 3508059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 29198490 - 29198530
Alignment:
Q  203 catatgattacattgaactatgtcatttgctaaaattatta 243  Q
    ||||||||||||||||| |||||||||| || |||||||||    
T  29198490 catatgattacattgaattatgtcattttctcaaattatta 29198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 31236580 - 31236628
Alignment:
Q  195 caccgacacatatgattacattgaactatgtcatttgctaaaattatta 243  Q
    ||||||||||||| ||||||||||| ||||| |||| || |||||||||    
T  31236580 caccgacacatataattacattgaattatgtgattttctcaaattatta 31236628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 31548295 - 31548331
Alignment:
Q  194 acaccgacacatatgattacattgaactatgtcattt 230  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  31548295 acaccgacacatgtgattacattgaattatgtcattt 31548331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 34201056 - 34201100
Alignment:
Q  202 acatatgattacattgaactatgtcatttgctaaaattattatta 246  Q
    |||||| ||||||||||| |||||||||| || ||||||||||||    
T  34201056 acatataattacattgaattatgtcattttctcaaattattatta 34201100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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