View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16402_high_14 (Length: 266)
Name: NF16402_high_14
Description: NF16402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16402_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 25466739 - 25466887
Alignment:
| Q |
8 |
agaagcaaaggaaacaaacttaaagaaaatctcactttccacggatacgccaacggtttatctctatcaaacacaacatcagcagaactattgtatatta |
107 |
Q |
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| T |
25466739 |
agaaacaaaggaaacaaacttaaagaaaatctcactttccacggatacgccaacggtttatctctatcaaacacaacatcagcagaactattgtatatta |
25466838 |
T |
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| Q |
108 |
agcgtttcactttagattctctgcaagcaataatcacattcttcgcacc |
156 |
Q |
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| T |
25466839 |
agcgtttcactttagattctctgcaagcaataatcacattcttcgcacc |
25466887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 25466956 - 25466994
Alignment:
| Q |
225 |
gagtaccttgaactattagcttatacaaactgcagaaat |
263 |
Q |
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| T |
25466956 |
gagtaccttgaactattagcttatacaaactgcagaaat |
25466994 |
T |
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