View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16402_high_22 (Length: 245)

Name: NF16402_high_22
Description: NF16402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16402_high_22
NF16402_high_22
[»] scaffold0054 (1 HSPs)
scaffold0054 (87-184)||(13342-13439)
[»] chr7 (1 HSPs)
chr7 (87-184)||(24802679-24802776)
[»] chr8 (1 HSPs)
chr8 (87-184)||(6829693-6829790)
[»] chr3 (5 HSPs)
chr3 (87-184)||(27966368-27966465)
chr3 (87-184)||(12417859-12417956)
chr3 (99-184)||(18157003-18157088)
chr3 (190-227)||(18153690-18153727)
chr3 (190-227)||(12415680-12415717)
[»] chr5 (2 HSPs)
chr5 (99-184)||(15281391-15281476)
chr5 (190-227)||(15278078-15278115)
[»] chr2 (1 HSPs)
chr2 (99-184)||(24222889-24222974)
[»] chr4 (1 HSPs)
chr4 (4-42)||(9517906-9517944)
[»] chr6 (1 HSPs)
chr6 (87-115)||(9817938-9817966)


Alignment Details
Target: scaffold0054 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 13439 - 13342
Alignment:
Q  87 ataactttgtacatttctattgcaggttgctaagaagatttgtataaaagtcaagtcttcaaaagattttttggaacagctctggttgttgttctgtg 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13439 ataactttgtacatttctattgcaggttgctaagaagatttgtatagaagtcaagtcttcgaaagattttttggaacagctctggttgttgttctgtg 13342  T

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Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 24802679 - 24802776
Alignment:
Q  87 ataactttgtacatttctattgcaggttgctaagaagatttgtataaaagtcaagtcttcaaaagattttttggaacagctctggttgttgttctgtg 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24802679 ataactttgtacatttctattgcaggttgctaagaagatttgtatagaagtcaagtcttcgaaagattttttggaacagctctggttgttgttctgtg 24802776  T

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Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 6829790 - 6829693
Alignment:
Q  87 ataactttgtacatttctattgcaggttgctaagaagatttgtataaaagtcaagtcttcaaaagattttttggaacagctctggttgttgttctgtg 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  6829790 ataactttgtacatttctattgcaggttgctaagaagatttgtatagaagtcaagtcttcgaaagattttttggaacatctctggttgttgttctgtg 6829693  T

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Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 27966465 - 27966368
Alignment:
Q  87 ataactttgtacatttctattgcaggttgctaagaagatttgtataaaagtcaagtcttcaaaagattttttggaacagctctggttgttgttctgtg 184  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  27966465 ataactttgtacatttctattgcaggttactaagaagatttgtatagaagtcaagtcttcgaaagattttttggaacatctctggttgttgttctgtg 27966368  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 12417956 - 12417859
Alignment:
Q  87 ataactttgtacatttctattgcaggttgctaagaagatttgtataaaagtcaagtcttcaaaagattttttggaacagctctggttgttgttctgtg 184  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  12417956 ataactttgtacatttctattgcaggttgctaaggtgatttgtatagaagtcaagtcttcgaaagattttttggaacaactctggttgttgttctgtg 12417859  T

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Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 18157088 - 18157003
Alignment:
Q  99 atttctattgcaggttgctaagaagatttgtataaaagtcaagtcttcaaaagattttttggaacagctctggttgttgttctgtg 184  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18157088 atttctattgcaggttgctaagaagatttgtatagaagtcaagtcttcgaaagattttttggaacagctctggttgttgttctgtg 18157003  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 18153727 - 18153690
Alignment:
Q  190 atttgtgttactgttaagacaagaagttatgctagttc 227  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18153727 atttgtgttactgttaagacaagaagttatgctagttc 18153690  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 12415717 - 12415680
Alignment:
Q  190 atttgtgttactgttaagacaagaagttatgctagttc 227  Q
    |||||||||||| |||||||||||||||||||||||||    
T  12415717 atttgtgttacttttaagacaagaagttatgctagttc 12415680  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 15281476 - 15281391
Alignment:
Q  99 atttctattgcaggttgctaagaagatttgtataaaagtcaagtcttcaaaagattttttggaacagctctggttgttgttctgtg 184  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15281476 atttctattgcaggttgctaagaagatttgtatagaagtcaagtcttcgaaagattttttggaacagctctggttgttgttctgtg 15281391  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 15278115 - 15278078
Alignment:
Q  190 atttgtgttactgttaagacaagaagttatgctagttc 227  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15278115 atttgtgttactgttaagacaagaagttatgctagttc 15278078  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 24222974 - 24222889
Alignment:
Q  99 atttctattgcaggttgctaagaagatttgtataaaagtcaagtcttcaaaagattttttggaacagctctggttgttgttctgtg 184  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24222974 atttctattgcaggttgctaagaagatttgtatagaagtcaagtcttcgaaagattttttggaacagctctggttgttgttctgtg 24222889  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 9517944 - 9517906
Alignment:
Q  4 tttatggtagtagttttagtgaatgcattgttatctcac 42  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9517944 tttatggtagtagttttagtgaatgcattgttatctcac 9517906  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 9817938 - 9817966
Alignment:
Q  87 ataactttgtacatttctattgcaggttg 115  Q
    |||||||||||||||||||||||||||||    
T  9817938 ataactttgtacatttctattgcaggttg 9817966  T

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