View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16402_high_4 (Length: 400)
Name: NF16402_high_4
Description: NF16402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16402_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 382
Target Start/End: Original strand, 12016133 - 12016506
Alignment:
| Q |
9 |
gagatgaatgactttgtcccacgttcaattcaacttaacctaacattaaaaattggtacttgtgatatattttgaaggtatgtgataaagtccaccatta |
108 |
Q |
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| T |
12016133 |
gagatgaatgactttgtcccacgttcaattcaacttaacctaacattaaaaattggtacttgtgatatattttgaaggtatgtgataaagtccgccatta |
12016232 |
T |
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| Q |
109 |
attggattacttgcttaccagtgtttcctaacgaaaaatacaataacagactttgttgttattgttgtttttaagaggaaaccaatttattaagaaacta |
208 |
Q |
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| T |
12016233 |
attggattacttgcttaccagtgtttcctaacgaaaaatacaataacagactttgttgttatggttgtttttaagaggaaatcaatttattaagaaacta |
12016332 |
T |
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| Q |
209 |
aatcaaccgtaacaaagataaatacaaagagggaccaaatgctaaggaatttgaatcccttgagcaagtggtcggataaacattattgcattcttgcata |
308 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| ||||||||| || |
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| T |
12016333 |
aatcaaccgtaacaaagataaatgcaaagagggaccaaatggtaagggatttgaatcccttgagcaagtggttggataaacattatttcattcttgcgta |
12016432 |
T |
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| Q |
309 |
cgaagaagattcgttgaacttgagagggaagaaccaaccatgtgtatccaataatctctagacatagataagtc |
382 |
Q |
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| T |
12016433 |
caaagaagattcgttgaacttgagagggaagaatcaaccatgtgtatctaatagtctcccgacatagataagtc |
12016506 |
T |
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