View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16402_low_1 (Length: 814)
Name: NF16402_low_1
Description: NF16402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16402_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 54475711 - 54475331
Alignment:
| Q |
18 |
aaatgattggtagaagtaaaaaggattcttaaaagatctaacttgaatctttcaaacaaaacnnnnnnncttggatgaattaccaattcttagaatgaca |
117 |
Q |
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| T |
54475711 |
aaatgattggtagaagtaaaaaggattcttaaaagatctaacttgaatctttcaaacaaaacaaaaaaacttggatgaattaccaattcttagaatgaca |
54475612 |
T |
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| Q |
118 |
agtgttttgtcttgggcaagttgggaaattcttatcaaattgatatttcaagcatatctcattctatggcacggacacttacctttttagtcatttgttt |
217 |
Q |
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| T |
54475611 |
agtgttttgtcttgggcaagttgggaaattcttatcaaattgatatttcaagcatatctcattctatggcacggacacttacctttttagtcatttgttt |
54475512 |
T |
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| Q |
218 |
gagaatgacaatgaaaaaatgatcaactattttggtgtggtaacggtttaagtaaaagtttttcaaactaacacgcaatcaatgtttgatgttgtccaaa |
317 |
Q |
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| T |
54475511 |
gagaatgacaatgaaaaaatgatcaactattttggtgtggtaacggtttaagtaaaagtttttcaaactaacacgcaatcaatgtttgatgttgtccaaa |
54475412 |
T |
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| Q |
318 |
caaataaatattcttaatcacattttattcacaataacttcagcactaatagtagcacttgcaattggatgttctctgttgtaa |
401 |
Q |
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| T |
54475411 |
caaataaa---tcttaatcacattttattcacaataacttcagcactaatagtagcacttgcaattggatgttctctgttgtaa |
54475331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 464 - 812
Target Start/End: Complemental strand, 54475267 - 54474927
Alignment:
| Q |
464 |
gtaatgggaattacgtatatccttatcaatgaatcatacaaaaagtcacaaaagaatataactctgtcatgtatttctttccctgtggcactaattttat |
563 |
Q |
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| T |
54475267 |
gtaatgggaattacgtatatccttatcaatgaatcatacaaaaagtcacaaaagaatataactctgtcatgtatttctttccctgtggcactaattttat |
54475168 |
T |
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| Q |
564 |
aattttatgccatggcctgaattaaaatcatatcgctagataatcagctgttacttttgctagctatctagctagttaacaaataaaataggatcatatc |
663 |
Q |
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| T |
54475167 |
--------gccatggcctgaattaaaatcatatcgctagataatcagctgttacttttgctagctatctagctagttaacaaataaaataggatcatatc |
54475076 |
T |
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| Q |
664 |
aggctttatttttcatggaattttgatccgcctccggttccagttaccgtcctcctagtataatcaacagaagattgatcactgctcgaggcagaaaggt |
763 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54475075 |
aggctttatttttcatggaattttgatccgcctccggttccagttaccgtcctcctagtataatcaacagaagattgatcactgctcgaggcggaaaggt |
54474976 |
T |
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| Q |
764 |
tgagtccatactcactagttgcaccgtactcactgctccctatgctact |
812 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54474975 |
tgagtccatactcactagttgcaccgtactcactgctccctgtgctact |
54474927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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