View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16402_low_13 (Length: 330)
Name: NF16402_low_13
Description: NF16402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16402_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 36453660 - 36453962
Alignment:
| Q |
13 |
tgaacctatttgggaatgggaacaactaaattggatctaaccttttaagtcaaaacatgcatataccttgcaagacctcttcttgtggatgtggttggta |
112 |
Q |
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| T |
36453660 |
tgaacctatttgggaatgggaacaactaaattggatctaaccttttaagtcaaaacatgcatataccttgcaagacctcttcttgtggatgtggttggta |
36453759 |
T |
|
| Q |
113 |
aacaaagaccaagacaatcatctaaatgttgggcataattaaatcctaaaccaggaatttgtttacaatagaaaaaagtaatatcttgtcattcttttag |
212 |
Q |
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| T |
36453760 |
aacaaagaccaagacaatcatctaaatgttgggcataattaaatcctaaaccaggaatttgtttacaatagaaaaaagtaatatcttgtcattcttttag |
36453859 |
T |
|
| Q |
213 |
aagtaatcacatactatatttatgnnnnnnnnataaggaagactatattttccttatgttatagtatgaagttttcacatgatgattaatctttgtagaa |
312 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
36453860 |
aagtaatcacatactatatttatgttttttttttaaggaagactatattttccttatgttatagtatgaagttttcaaaggatgattaatctttgtagaa |
36453959 |
T |
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| Q |
313 |
aac |
315 |
Q |
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||| |
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| T |
36453960 |
aac |
36453962 |
T |
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