View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16402_low_15 (Length: 267)

Name: NF16402_low_15
Description: NF16402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16402_low_15
NF16402_low_15
[»] chr6 (10 HSPs)
chr6 (11-248)||(2368885-2369122)
chr6 (11-248)||(2363139-2363376)
chr6 (11-248)||(2351508-2351745)
chr6 (66-248)||(2340110-2340292)
chr6 (13-248)||(2307376-2307611)
chr6 (73-235)||(14711303-14711465)
chr6 (66-236)||(2261243-2261413)
chr6 (97-235)||(14753374-14753512)
chr6 (26-212)||(2357839-2358025)
chr6 (97-206)||(2297361-2297470)
[»] chr3 (1 HSPs)
chr3 (24-248)||(4305850-4306074)
[»] chr4 (1 HSPs)
chr4 (11-249)||(5804191-5804429)
[»] scaffold0408 (1 HSPs)
scaffold0408 (106-235)||(560-689)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 2368885 - 2369122
Alignment:
Q  11 cagagaattgcagtttaggtggatatgatgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatcc 110  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||| |||||||| ||||    
T  2368885 cagagaattgcaatttagatggatatgatgtaagaaaaggaacacggttaattttgaatcttagaaagattcacactgatccaaatatttggtcaaatcc 2368984  T
Q  111 attggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaagaatt 210  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  2368985 attggaattcaaaccagagcggtttcttactacccataaagacgttgatgttagaggtcatcattttgagctattaccatttggaggtggtagaaggatt 2369084  T
Q  211 tgcccaggaatgtcatttggccttcaaatggtgcattt 248  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  2369085 tgccctggaatgtcatttggccttcaaatggtgcattt 2369122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 2363139 - 2363376
Alignment:
Q  11 cagagaattgcagtttaggtggatatgatgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatcc 110  Q
    |||||||||| | |||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  2363139 cagagaattgtaatttaggtggatatgatgtaagaaatggaacacgattaattttgaatctttggaagattcacactgatcctaatgtttggtcagatcc 2363238  T
Q  111 attggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaagaatt 210  Q
    ||| | ||||||||| ||| |||||||||| || ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2363239 attagtattcaaaccggagaggtttcttacaacgcataaagatattgattttagaggtaatcattttgagctattaccatttggaggtggtagaaggatt 2363338  T
Q  211 tgcccaggaatgtcatttggccttcaaatggtgcattt 248  Q
    || || ||||| ||||| || ||||||||| |||||||    
T  2363339 tgtcccggaatatcattagggcttcaaatgctgcattt 2363376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 2351508 - 2351745
Alignment:
Q  11 cagagaattgcagtttaggtggatatgatgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatcc 110  Q
    |||||||||||| | | ||||| ||  |||| ||||||||||| ||||||||  ||||||||||||||||||| |||||||| | |||||||||||||||    
T  2351508 cagagaattgcactattggtggttaccatgttagaaaaggaactcggttaatgctaaatctttggaagattcaaactgatcctagtgtttggtcagatcc 2351607  T
Q  111 attggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaagaatt 210  Q
    ||| || |||||||||||  |||||||||| || ||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| |      
T  2351608 attagagttcaaaccagaaaggtttcttaccactcataaagttgttgatgttagaggtaatcattttgaactactaccatttggaagtggtagaaggaag 2351707  T
Q  211 tgcccaggaatgtcatttggccttcaaatggtgcattt 248  Q
    || || | ||| || ||||| |||||||| ||||||||    
T  2351708 tgtcctgcaatatcttttggacttcaaattgtgcattt 2351745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 66 - 248
Target Start/End: Original strand, 2340110 - 2340292
Alignment:
Q  66 aaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttaga 165  Q
    |||||||||||||||||| || ||||| | ||||||| |||||||||| || |||||||||||  ||||| |||| || ||||||| |||||||||||||    
T  2340110 aaatctttggaagattcaaacagatcctagtgtttggccagatccattagagttcaaaccagaaaggttttttaccactcataaagctgttgatgttaga 2340209  T
Q  166 ggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttcaaatggtgcattt 248  Q
    |||||||||||||| ||||||||||||||| |||||||||| |  || || ||||| || ||||| ||||||||| |||||||    
T  2340210 ggtaatcattttgaactattaccatttggaagtggtagaaggaaatgtcctggaatatcgtttggacttcaaatgctgcattt 2340292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 2307376 - 2307611
Alignment:
Q  13 gagaattgcagtttaggtggatatgatgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatccat 112  Q
    |||||||| | |||||| || ||| |||| | ||| ||||| || |||||   ||||||||||| |||| |||| ||||| ||| ||||| |||||||||    
T  2307376 gagaattgtactttaggaggttatcatgttataaagggaactcgattaatcacaaatctttggaggattaacacggatcctaatatttggccagatccat 2307475  T
Q  113 tggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaagaatttg 212  Q
    | || |||||||||||  | |||||||| || |||||||||||||||||||| |||| | |||||| |||||| ||||||||| |||||||||| || ||    
T  2307476 tagagttcaaaccagaaagatttcttaccactcataaagatgttgatgttaggggtagtaattttgtgctattgccatttggaagtggtagaaggatatg 2307575  T
Q  213 cccaggaatgtcatttggccttcaaatggtgcattt 248  Q
    ||| ||||| ||| |||| ||||||||| |||||||    
T  2307576 ccctggaatatcacttggacttcaaatgctgcattt 2307611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 235
Target Start/End: Complemental strand, 14711465 - 14711303
Alignment:
Q  73 tggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatc 172  Q
    |||||||| || |||||||| | ||||||| | ||||||||||| |||||||| ||| | |||||||| || ||||||||||||||||||||||||||||    
T  14711465 tggaagatccaaactgatcctagtgtttggccggatccattggagttcaaacctgagagatttcttacaactcataaagatgttgatgttagaggtaatc 14711366  T
Q  173 attttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttc 235  Q
    |||||||||| |||||||||||| |||| ||||| || || || ||||| || |||| |||||    
T  14711365 attttgagcttttaccatttggaagtggaagaaggatgtgtcctggaatatcctttgcccttc 14711303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 2261413 - 2261243
Alignment:
Q  66 aaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttaga 165  Q
    |||||||||||| ||||| || ||||||| | ||||| |||||||||| || |||||||||||  | |||||||| || || ||| |||||||||  |      
T  2261413 aaatctttggaaaattcaaaccgatccaagtatttggccagatccattagagttcaaaccagaaagatttcttaccactcacaaaaatgttgatgccaag 2261314  T
Q  166 ggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgtcatttggccttca 236  Q
    ||| | ||||||||| | |||||||||||| |||||||||| || || |||||||| || ||||| |||||    
T  2261313 ggtcaacattttgagttgttaccatttggaagtggtagaaggatatgtccaggaatatcttttggtcttca 2261243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 235
Target Start/End: Complemental strand, 14753512 - 14753374
Alignment:
Q  97 gtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggag 196  Q
    |||||| | ||||||||||| ||||| || | | | |||||||| || |||||||||||||||||||  ||| ||||||||||| | ||||||||||||     
T  14753512 gtttggccggatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggtcatcattttgagtttttaccatttggaa 14753413  T
Q  197 gtggtagaagaatttgcccaggaatgtcatttggccttc 235  Q
    |||| ||||| ||||| || ||||| || ||||||||||    
T  14753412 gtggaagaaggatttgtcctggaatatcctttggccttc 14753374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 2357839 - 2358025
Alignment:
Q  26 taggtggatatgatgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaacc 125  Q
    ||||||| |||||||| | ||||||||| ||  |||| |||||||||||||| || || || || |  ||||||||||| ||||||||  | || |||||    
T  2357839 taggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaaaatccaaacagaccataatgtttggtcggatccattaaagtttaaacc 2357938  T
Q  126 agagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaagaatttg 212  Q
    |||  | |||||||  ||  ||||||||||||||||| ||||   ||| |||||| | |||||||||||| |||||||||| |||||    
T  2357939 agaaagatttcttaacacttataaagatgttgatgttcgagggtgtcactttgagttgttaccatttggaagtggtagaaggatttg 2358025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 2297361 - 2297470
Alignment:
Q  97 gtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggag 196  Q
    ||||||||||||||||| ||||| ||||| ||  |||||||||| ||  | |||||||||||| || | ||| |  |||||||| | || |||||||||     
T  2297361 gtttggtcagatccattagaatttaaacctgaaaggtttcttaccactaacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaa 2297460  T
Q  197 gtggtagaag 206  Q
    |||| |||||    
T  2297461 gtggaagaag 2297470  T

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Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 24 - 248
Target Start/End: Original strand, 4305850 - 4306074
Alignment:
Q  24 tttaggtggatatgatgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaa 123  Q
    ||||||||| |||||||| | |||||||||  |  ||||  | ||||| |||||||| || |||||||| || ||||||| ||| || || || ||||||    
T  4305850 tttaggtggttatgatgtcaaaaaaggaactagactaatcatgaatctatggaagatccatactgatcctaaggtttggttagaacctttagagttcaaa 4305949  T
Q  124 ccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaagaatttgcccaggaatgt 223  Q
    ||||| |||||||||||||| ||||||| |||||||||||  ||| ||||||||||| |||||||||||||| |||||||||| ||||| |||||||| |    
T  4305950 ccagaacggtttcttactactcataaaggtgttgatgttaagggtcatcattttgagttattaccatttggaagtggtagaaggatttgtccaggaatat 4306049  T
Q  224 catttggccttcaaatggtgcattt 248  Q
    | | |||||||||||||||||||||    
T  4306050 cttatggccttcaaatggtgcattt 4306074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 5804429 - 5804191
Alignment:
Q  11 cagagaattgcagtttaggtggatatgatgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatcc 110  Q
    |||||||||||| ||||||||| ||| |||| | ||||||||| || |||||   ||||||||||||||| || || ||||  | ||||||| || ||||    
T  5804429 cagagaattgcactttaggtggttatcatgttacaaaaggaactcgattaatcacaaatctttggaagatccaaacagatcttagtgtttggccaaatcc 5804330  T
Q  111 attggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaagaatt 210  Q
    ||| || || || |||||  |||||||||| || ||||||||| |||||||||| |||||||||||||| |||  |||||||||| |||||||||| |      
T  5804329 attagattttaagccagaaaggtttcttacaactcataaagatattgatgttaggggtaatcattttgaactacaaccatttggaagtggtagaaggaaa 5804230  T
Q  211 tgcccaggaatgtcatttggccttcaaatggtgcatttt 249  Q
    || || ||||| |  ||||| ||||||||||||||||||    
T  5804229 tgtcctggaatatgttttggacttcaaatggtgcatttt 5804191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 235
Target Start/End: Original strand, 560 - 689
Alignment:
Q  106 gatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaa 205  Q
    ||||||||||| ||||| || | | | |||||||| || |||||||||||||||||||  ||| ||||||||||| | |||||||||||| |||| ||||    
T  560 gatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggtcatcattttgagtttttaccatttggaagtggaagaa 659  T
Q  206 gaatttgcccaggaatgtcatttggccttc 235  Q
    | ||||| || ||||| || ||||||||||    
T  660 ggatttgtcctggaatatcctttggccttc 689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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