View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16402_low_17 (Length: 265)

Name: NF16402_low_17
Description: NF16402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16402_low_17
NF16402_low_17
[»] chr5 (5 HSPs)
chr5 (28-253)||(32796191-32796416)
chr5 (102-253)||(19667910-19668061)
chr5 (28-98)||(19670677-19670747)
chr5 (28-98)||(32795582-32795652)
chr5 (32-92)||(26896591-26896651)
[»] chr1 (5 HSPs)
chr1 (102-250)||(22827697-22827845)
chr1 (28-98)||(22840976-22841046)
chr1 (28-98)||(22827079-22827149)
chr1 (36-98)||(22826684-22826746)
chr1 (29-98)||(24272755-24272824)
[»] chr6 (11 HSPs)
chr6 (118-250)||(2922512-2922644)
chr6 (102-250)||(27413936-27414085)
chr6 (35-98)||(13556056-13556119)
chr6 (28-98)||(13558027-13558097)
chr6 (28-99)||(16403531-16403601)
chr6 (28-98)||(2921894-2921964)
chr6 (28-98)||(2923210-2923281)
chr6 (28-98)||(11678847-11678917)
chr6 (28-67)||(27340686-27340725)
chr6 (28-67)||(27401426-27401465)
chr6 (29-98)||(11677130-11677199)
[»] scaffold0003 (1 HSPs)
scaffold0003 (102-250)||(79040-79189)
[»] scaffold0007 (1 HSPs)
scaffold0007 (29-98)||(260217-260286)
[»] chr7 (3 HSPs)
chr7 (28-98)||(7961784-7961854)
chr7 (28-78)||(1103165-1103215)
chr7 (28-98)||(11269964-11270034)
[»] chr2 (3 HSPs)
chr2 (28-98)||(10128508-10128578)
chr2 (28-97)||(8761225-8761295)
chr2 (28-98)||(37965532-37965603)
[»] chr4 (7 HSPs)
chr4 (28-98)||(27272578-27272648)
chr4 (28-90)||(53469713-53469775)
chr4 (30-98)||(10395972-10396040)
chr4 (28-98)||(29235173-29235244)
chr4 (28-66)||(13816950-13816988)
chr4 (32-85)||(21206361-21206414)
chr4 (32-97)||(53472595-53472658)
[»] chr3 (3 HSPs)
chr3 (32-98)||(31141415-31141481)
chr3 (30-98)||(25889633-25889701)
chr3 (36-90)||(30046435-30046489)
[»] chr8 (1 HSPs)
chr8 (58-98)||(42001905-42001945)


Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 28 - 253
Target Start/End: Complemental strand, 32796416 - 32796191
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaataaatctccaatacttgaatcttactcgcct 127  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||||||||||||||||     
T  32796416 atatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattccttgcacaaataaatctccaaaacttgaatcttactcgccc 32796317  T
Q  128 agacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcacttaaaagagtgctcagacacttggcgggt 227  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||  ||||||||||    
T  32796316 agacattgccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacagcgcattggactgcactcaaaagagtgctcagatgcttggcgggt 32796217  T
Q  228 tcctgtgacaaaggcgtcttcatctc 253  Q
    |||||| |||||||||||||||||||    
T  32796216 tcctgtaacaaaggcgtcttcatctc 32796191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 102 - 253
Target Start/End: Original strand, 19667910 - 19668061
Alignment:
Q  102 ctccaatacttgaatcttactcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcactta 201  Q
    ||||||||||||| ||||||||||| | ||||| |  ||||||||| |||||  |||||||||||||||||||||||||||||||||||||| ||| | |    
T  19667910 ctccaatacttgagtcttactcgcccatacatttcattcagcacaagcaaacctgcccaattcatgcagaatcccagaacggcgcattggaccgcaatca 19668009  T
Q  202 aaagagtgctcagacacttggcgggttcctgtgacaaaggcgtcttcatctc 253  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  19668010 aaagagttctcagatacttggcgggttcctgtgacaaaggcgtcttcatctc 19668061  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 19670677 - 19670747
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  19670677 atatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgtaccaata 19670747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 32795652 - 32795582
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    |||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| |||||||    
T  32795652 atatgaagaaatatgcaaagacttagtcatattaataaaagtcttgcgtgtcagtattacttgtaccaata 32795582  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 26896591 - 26896651
Alignment:
Q  32 gaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgca 92  Q
    |||||||||||||||||||| | ||||||||||||  | |||||||| |||||| ||||||    
T  26896591 gaagaaatatgcaaagacttggccatataaataaagacattgtgtgttagtatttcttgca 26896651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 102 - 250
Target Start/End: Complemental strand, 22827845 - 22827697
Alignment:
Q  102 ctccaatacttgaatcttactcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcactta 201  Q
    ||||||||||||| ||||||| ||| ||||||| || ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |    
T  22827845 ctccaatacttgagtcttacttgcccagacattgccttcagcacaaacaaactcgcgcaattcatgcaaaaccccagaacggcgcattggactgcactca 22827746  T
Q  202 aaagagtgctcagacacttggcgggttcctgtgacaaaggcgtcttcat 250  Q
    |||||||||||| | |||||||||||||||||||||||||| |||||||    
T  22827745 aaagagtgctcaaatacttggcgggttcctgtgacaaaggcatcttcat 22827697  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 22840976 - 22841046
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    |||||||||||||||||||| ||| |||||| ||||||||||||||||||| |||||| ||||||||||||    
T  22840976 atatgaagaaatatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcaccaata 22841046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 22827149 - 22827079
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    ||||||||||||||||||||  || ||||||||||||||||||||||||||   |||| ||||||||||||    
T  22827149 atatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcaccaata 22827079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 22826746 - 22826684
Alignment:
Q  36 aaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    |||| ||||||| ||| |||||||||||||||||||| ||||| |||||| ||||||||||||    
T  22826746 aaatctgcaaaggcttggtcatataaataaaagccttatgtgttagtatttcttgcaccaata 22826684  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 24272755 - 24272824
Alignment:
Q  29 tatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    |||||||||||||||||||||||    ||||| ||||| ||||||||||| |||||| ||||||||||||    
T  24272755 tatgaagaaatatgcaaagacttgacaatatatataaaggccttgtgtgttagtatttcttgcaccaata 24272824  T

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Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 118 - 250
Target Start/End: Complemental strand, 2922644 - 2922512
Alignment:
Q  118 ttactcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcacttaaaagagtgctcagaca 217  Q
    ||||||||||||||||| || ||| ||||||||||||| ||||||||||||| || |||| ||||||||||||||||||||| ||||||||||||||| |    
T  2922644 ttactcgcctagacattgccttcatcacaaacaaactcacccaattcatgcaaaaccccataacggcgcattggactgcactcaaaagagtgctcagata 2922545  T
Q  218 cttggcgggttcctgtgacaaaggcgtcttcat 250  Q
    |||||| ||||||| ||||||||||||||||||    
T  2922544 cttggcaggttcctatgacaaaggcgtcttcat 2922512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 102 - 250
Target Start/End: Complemental strand, 27414085 - 27413936
Alignment:
Q  102 ctccaatacttgaatcttactcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcactta 201  Q
    |||||| ||||||  ||||||| |||||||||| || ||| ||||||||||||||||||||||||||| ||  ||||||||| | ||||||||||||| |    
T  27414085 ctccaacacttgagccttactctcctagacattgccttcaacacaaacaaactcgcccaattcatgcaaaactccagaacggtgtattggactgcactca 27413986  T
Q  202 aaagagtgctcagacac-ttggcgggttcctgtgacaaaggcgtcttcat 250  Q
    |||||||||||  | || ||||||||||||||||||||||| ||||||||    
T  27413985 aaagagtgctcctatactttggcgggttcctgtgacaaaggtgtcttcat 27413936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 13556119 - 13556056
Alignment:
Q  35 gaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| |||||| ||||||||||||    
T  13556119 gaaatatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaata 13556056  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 13558097 - 13558027
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    |||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||| | ||||||||||    
T  13558097 atatgaagaaatatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcaccaata 13558027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 16403531 - 16403601
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaataa 99  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||   ||||| ||||||||||||    
T  16403531 atatgaagaaatatgcaa-gacttagtcatataaataaaagtcttgtgtgtttatattatttgcaccaataa 16403601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 2921964 - 2921894
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    |||||||||||||||||| ||||| || ||||||||||||| ||| ||||| |||||| ||||||||||||    
T  2921964 atatgaagaaatatgcaatgacttggtaatataaataaaagtcttatgtgttagtatttcttgcaccaata 2921894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 2923281 - 2923210
Alignment:
Q  28 atatgaagaaatatgcaaa-gacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    ||||||||||||||||||| | ||| |||||||||||||||| ||||||||| |||| | ||||||| ||||    
T  2923281 atatgaagaaatatgcaaaaggcttggtcatataaataaaagtcttgtgtgttagtacttcttgcactaata 2923210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 11678847 - 11678917
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    |||||||||||||||||||| ||| ||||| |||||||||  ||||||||| |||||| ||  ||||||||    
T  11678847 atatgaagaaatatgcaaaggcttggtcatgtaaataaaactcttgtgtgttagtatttctaacaccaata 11678917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 27340725 - 27340686
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaa 67  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  27340725 atatgaagaaatatgcaaaggcttggtcatataaataaaa 27340686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 27401465 - 27401426
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaa 67  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  27401465 atatgaagaaatatgcaaaggcttggtcatataaataaaa 27401426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 11677130 - 11677199
Alignment:
Q  29 tatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    |||||||||||||||||||  ||  ||||||||||||||  ||||||||| |||||| ||  ||||||||    
T  11677130 tatgaagaaatatgcaaaggattgatcatataaataaaactcttgtgtgttagtatttctaacaccaata 11677199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 102 - 250
Target Start/End: Original strand, 79040 - 79189
Alignment:
Q  102 ctccaatacttgaatcttactcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcactta 201  Q
    |||||| ||||||  ||||||| |||||||||| || ||| ||||||||||||||||||||||||||| ||  ||||||||| | ||||||||||||| |    
T  79040 ctccaacacttgagccttactctcctagacattgccttcaacacaaacaaactcgcccaattcatgcaaaactccagaacggtgtattggactgcactca 79139  T
Q  202 aaagagtgctcagacac-ttggcgggttcctgtgacaaaggcgtcttcat 250  Q
    |||||||||||  | || ||||||||||||||||||||||| ||||||||    
T  79140 aaagagtgctcctatactttggcgggttcctgtgacaaaggtgtcttcat 79189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 260286 - 260217
Alignment:
Q  29 tatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||||||    
T  260286 tatgaagaaatatgcaaagacttagtcaaataaataaaatccttgtgtgttagtatttcttgcaccaata 260217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 7961784 - 7961854
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    ||||||||||||||||||||  || |||||||||||||||||||||||||| |||||| ||||||||||||    
T  7961784 atatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaata 7961854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 1103165 - 1103215
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgt 78  Q
    ||||||||||||||| |||||||| | ||||||||||||||||||||||||    
T  1103165 atatgaagaaatatgtaaagacttggccatataaataaaagccttgtgtgt 1103215  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 11269964 - 11270034
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    ||||||||||||||  |||   || |||||||||||||||||||||||||| ||||||| |||||||||||    
T  11269964 atatgaagaaatataaaaaagtttggtcatataaataaaagccttgtgtgttagtattagttgcaccaata 11270034  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 10128508 - 10128578
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    ||||||||||||||| |||||||| |||||||||||||||| ||||||||| |||||| ||||||||||||    
T  10128508 atatgaagaaatatggaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaata 10128578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 8761295 - 8761225
Alignment:
Q  28 atatgaagaaatatgcaaagacttag-tcatataaataaaagccttgtgtgtcagtattacttgcaccaat 97  Q
    ||||||||||||||||||| |||| | ||||||||||||||| ||||||||| |||||| |||||||||||    
T  8761295 atatgaagaaatatgcaaatactttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaat 8761225  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 37965603 - 37965532
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaag-ccttgtgtgtcagtattacttgcaccaata 98  Q
    |||||||||||||||||||||||| |  ||||||||||||| | |||||||| |||||| ||||||||||||    
T  37965603 atatgaagaaatatgcaaagacttggatatataaataaaagtctttgtgtgttagtatttcttgcaccaata 37965532  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 27272578 - 27272648
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    ||||||||||||||||||||  || |||||||||||||||| ||||||||| |||||| ||||||||||||    
T  27272578 atatgaagaaatatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaata 27272648  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 53469775 - 53469713
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttg 90  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||| ||||    
T  53469775 atatgaagaaatatgcaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttg 53469713  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 10395972 - 10396040
Alignment:
Q  30 atgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    |||||||||||||||||||||  | |||||||||||||||||||||||| |||||| |||||| |||||    
T  10395972 atgaagaaatatgcaaagactcggccatataaataaaagccttgtgtgttagtatttcttgcatcaata 10396040  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 29235244 - 29235173
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagt-attacttgcaccaata 98  Q
    ||||||| |||||||||||||||| | |||||||||||| ||||||||||| ||| ||| ||||||||||||    
T  29235244 atatgaaaaaatatgcaaagacttggccatataaataaaggccttgtgtgttagtaatttcttgcaccaata 29235173  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 13816950 - 13816988
Alignment:
Q  28 atatgaagaaatatgcaaagacttagtcatataaataaa 66  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  13816950 atatgaagaaatatgcgaagacttggtcatataaataaa 13816988  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 21206361 - 21206414
Alignment:
Q  32 gaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtatt 85  Q
    |||||||||| ||||| ||| |||||||||||||||||| ||||| | ||||||    
T  21206361 gaagaaatatacaaaggcttggtcatataaataaaagccatgtgtattagtatt 21206414  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 53472658 - 53472595
Alignment:
Q  32 gaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaat 97  Q
    |||||||||||||||||||| | ||||||||||||||  |||||||| |||||| | |||||||||    
T  53472658 gaagaaatatgcaaagactt-gccatataaataaaag-tttgtgtgttagtatttcatgcaccaat 53472595  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 31141415 - 31141481
Alignment:
Q  32 gaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    ||||||||||||||||| |||| |||||||||||||| |||| |||| |||||| ||| ||||||||    
T  31141415 gaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttacaccaata 31141481  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 25889633 - 25889701
Alignment:
Q  30 atgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    |||||||  |||||||||  || |||||||||||||||| ||||| ||| |||||| ||||||||||||    
T  25889633 atgaagagttatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcaccaata 25889701  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 30046435 - 30046489
Alignment:
Q  36 aaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttg 90  Q
    ||||||||||||||||   ||||||||||||||| |||||||| |||||| ||||    
T  30046435 aaatatgcaaagacttgaccatataaataaaagctttgtgtgttagtatttcttg 30046489  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 42001905 - 42001945
Alignment:
Q  58 ataaataaaagccttgtgtgtcagtattacttgcaccaata 98  Q
    ||||||||||| ||||||||| |||| ||||||||||||||    
T  42001905 ataaataaaagtcttgtgtgttagtaatacttgcaccaata 42001945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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