View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16402_low_18 (Length: 260)

Name: NF16402_low_18
Description: NF16402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16402_low_18
NF16402_low_18
[»] chr4 (31 HSPs)
chr4 (1-249)||(5615689-5615937)
chr4 (1-249)||(9183784-9184032)
chr4 (3-246)||(5685754-5685997)
chr4 (3-249)||(5691969-5692213)
chr4 (8-232)||(9276442-9276667)
chr4 (7-232)||(5719811-5720037)
chr4 (10-237)||(9205410-9205640)
chr4 (9-249)||(9287327-9287564)
chr4 (42-231)||(9196017-9196206)
chr4 (10-237)||(9209629-9209859)
chr4 (12-246)||(9244891-9245125)
chr4 (1-247)||(5768211-5768460)
chr4 (6-193)||(5748737-5748921)
chr4 (1-247)||(5761671-5761919)
chr4 (13-154)||(9246074-9246215)
chr4 (1-247)||(5765967-5766216)
chr4 (1-247)||(5763804-5764052)
chr4 (1-247)||(5727807-5728056)
chr4 (147-249)||(9202363-9202465)
chr4 (147-245)||(9202876-9202974)
chr4 (147-249)||(9206071-9206173)
chr4 (147-245)||(9206585-9206683)
chr4 (147-249)||(9210291-9210393)
chr4 (147-249)||(9218791-9218893)
chr4 (147-248)||(9211830-9211931)
chr4 (147-245)||(9210805-9210903)
chr4 (147-249)||(9218277-9218379)
chr4 (1-149)||(5678724-5678861)
chr4 (1-77)||(15465480-15465556)
chr4 (197-242)||(5675005-5675050)
chr4 (16-76)||(10980608-10980668)
[»] scaffold1826 (1 HSPs)
scaffold1826 (13-249)||(130-366)
[»] scaffold0135 (22 HSPs)
scaffold0135 (10-237)||(3493-3723)
scaffold0135 (10-237)||(7708-7938)
scaffold0135 (10-237)||(11923-12153)
scaffold0135 (10-237)||(16138-16368)
scaffold0135 (10-237)||(20353-20583)
scaffold0135 (10-237)||(24568-24798)
scaffold0135 (10-237)||(28783-29013)
scaffold0135 (147-249)||(445-547)
scaffold0135 (147-245)||(958-1056)
scaffold0135 (147-249)||(4152-4254)
scaffold0135 (147-245)||(4665-4763)
scaffold0135 (147-249)||(8367-8469)
scaffold0135 (147-245)||(8880-8978)
scaffold0135 (147-249)||(12582-12684)
scaffold0135 (147-245)||(13095-13193)
scaffold0135 (147-249)||(16797-16899)
scaffold0135 (147-245)||(17310-17408)
scaffold0135 (147-249)||(21012-21114)
scaffold0135 (147-245)||(21525-21623)
scaffold0135 (147-249)||(25227-25329)
scaffold0135 (147-245)||(25740-25838)
scaffold0135 (147-249)||(29442-29544)
[»] scaffold0386 (5 HSPs)
scaffold0386 (19-247)||(4527-4755)
scaffold0386 (5-149)||(10407-10552)
scaffold0386 (148-249)||(13258-13358)
scaffold0386 (148-242)||(8896-8989)
scaffold0386 (19-149)||(7399-7530)
[»] chr3 (7 HSPs)
chr3 (17-248)||(18535985-18536216)
chr3 (15-242)||(18550249-18550476)
chr3 (6-193)||(18678775-18678959)
chr3 (1-247)||(18651577-18651826)
chr3 (91-247)||(18691003-18691156)
chr3 (180-248)||(18549189-18549257)
chr3 (1-45)||(5217052-5217096)
[»] scaffold0753 (2 HSPs)
scaffold0753 (12-249)||(1890-2128)
scaffold0753 (13-98)||(1-86)
[»] scaffold0959 (1 HSPs)
scaffold0959 (13-187)||(3682-3856)
[»] scaffold1952 (1 HSPs)
scaffold1952 (100-249)||(1-150)
[»] scaffold0911 (3 HSPs)
scaffold0911 (146-249)||(1903-2006)
scaffold0911 (144-249)||(873-978)
scaffold0911 (147-249)||(1389-1491)
[»] chr1 (1 HSPs)
chr1 (14-193)||(14589030-14589206)
[»] chr7 (11 HSPs)
chr7 (1-129)||(19307487-19307615)
chr7 (5-76)||(1821657-1821728)
chr7 (15-77)||(1872374-1872436)
chr7 (17-168)||(10258522-10258670)
chr7 (1-77)||(1811738-1811814)
chr7 (1-49)||(20331029-20331077)
chr7 (5-76)||(1841452-1841523)
chr7 (14-77)||(1851115-1851178)
chr7 (14-129)||(10292024-10292139)
chr7 (24-77)||(1866325-1866378)
chr7 (1-129)||(19394877-19395006)
[»] chr6 (1 HSPs)
chr6 (67-129)||(14320034-14320096)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 5615689 - 5615937
Alignment:
Q  1 atactattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5615689 atactattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagt 5615788  T
Q  101 aaatgacttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaatt 200  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5615789 aaatgacttgatctctttatattgtataatcaatttcatagtcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaatt 5615888  T
Q  201 ctagaatcattactaaatgtctcttaaatataccaatctgttatttttg 249  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5615889 ctagaatcattactaaatgtctcttaaatataccaatctattatttttg 5615937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 9183784 - 9184032
Alignment:
Q  1 atactattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagt 100  Q
    ||||| |||||||||||||||| |||||||||| ||| | || ||||||||||||||||||||| |||||||||||  |||||||  |||||||||||||    
T  9183784 atactgttatgcaaagaaatatagaaagaaataaaattataaaataaactaacttcggagtttcaaccatattttttcctatttgcatccaaataatagt 9183883  T
Q  101 aaatgacttgatctctttatagtgtataatcaat-ttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaat 199  Q
    || ||||||||||| ||||||||||||| | ||  |||||  ||||| ||||||||||||||||||||||||||||| |||||||||| ||||| | |||    
T  9183884 aa-tgacttgatctttttatagtgtatagtaaaaattcatggtcttagagaaataattaaatagtttaagcattataaaattttaaaagcccttcagaat 9183982  T
Q  200 tctagaatcattactaaatgtctcttaaatataccaatctgttatttttg 249  Q
    | |||||| |||||||||||||||||||||||| |||| |||||||||||    
T  9183983 tttagaattattactaaatgtctcttaaatatatcaatgtgttatttttg 9184032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 3 - 246
Target Start/End: Complemental strand, 5685997 - 5685754
Alignment:
Q  3 actattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaa 102  Q
    ||||| |||| || || |||||||||||||||||| | |||||||||||||||||||||||   ||||||||||  |||||||  |||||||||||||||    
T  5685997 actatgatgctaaaaattatggaaagaaatagaattagaacataaactaacttcggagttttagccatattttttcctatttgaatccaaataatagtaa 5685898  T
Q  103 atgacttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattct 202  Q
    |||| || |||||||||||||||||||| ||||  ||  ||||||||||||||||||||||||||| |||| || |||||||||||||||| ||||||||    
T  5685897 atgagttaatctctttatagtgtataataaattgtatcgtcttatagaaataattaaatagtttaatcattttaaaattttaaaaacccttcaaaattct 5685798  T
Q  203 agaatcattactaaatgtctcttaaatataccaatctgttattt 246  Q
    ||||| |||||| ||| | ||||||||||| |||| ||||||||    
T  5685797 agaataattactgaatatatcttaaatatatcaatgtgttattt 5685754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 3 - 249
Target Start/End: Complemental strand, 5692213 - 5691969
Alignment:
Q  3 actattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaa 102  Q
    ||||| |||| || ||||||||||||||||||||| | ||||||||| ||||||| |||||  |||||||||||  ||||||   |||||||||| ||||    
T  5692213 actatgatgctaaaaaatatggaaagaaatagaattagaacataaacaaacttcgaagttttaaccatattttttcctatttca-tccaaataattgtaa 5692115  T
Q  103 atgacttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattct 202  Q
    |||| ||||||||||||||||||||||| |||| |||  | ||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||||||    
T  5692114 atgagttgatctctttatagtgtataataaattgcatggtattatagaaataattaaatagtttaagcattatagaatttt-aaaacccttcagaattct 5692016  T
Q  203 agaatcattactaaatgtctcttaaatataccaatctgttatttttg 249  Q
    |||||| |||| |||||||||||||||||| |||| |||||||||||    
T  5692015 agaatcgttacaaaatgtctcttaaatatatcaatgtgttatttttg 5691969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 9276442 - 9276667
Alignment:
Q  8 tatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatgac 107  Q
    ||||||||||||||| |||| ||||| ||| | |||||||||||||||| ||||||| |||||||||||  |||||||  ||||||||||||||||||||    
T  9276442 tatgcaaagaaatatagaaaaaaataaaattataacataaactaacttcagagtttcaaccatattttttcctatttgcatccaaataatagtaaatgac 9276541  T
Q  108 ttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaacccttt-aaaattctagaa 206  Q
    |||||||||||||| |||||| | || |||||  ||||| ||||||||||||||||||||||||||||| |||||||||| |||||| | |||| |||||    
T  9276542 ttgatctctttataatgtatagtaaagttcatggtcttagagaaataattaaatagtttaagcattataaaattttaaaagccctttcagaattttagaa 9276641  T
Q  207 tcattactaaatgtctcttaaatata 232  Q
    | |||| |||||||||||||||||||    
T  9276642 ttattagtaaatgtctcttaaatata 9276667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 5719811 - 5720037
Alignment:
Q  7 ttatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatga 106  Q
    |||||| |||||||||||||||||||||||| | ||||||||||||||||  ||||||  |||||||  |  |||||||  |||||||||||||||||||    
T  5719811 ttatgccaagaaatatggaaagaaatagaattataacataaactaacttcatagtttcagccatattacttcctatttgcatccaaataatagtaaatga 5719910  T
Q  107 cttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaa-ttttaaaaaccctttaaaattctaga 205  Q
    |||||| | ||||||||||||||| || |||||  || | |||||||||||||||||||||||||||||| || |||||||||||||| |  |||  |||    
T  5719911 cttgatttgtttatagtgtataataaagttcatcgtcatgtagaaataattaaatagtttaagcattataaaatttttaaaaacccttcagcatttaaga 5720010  T
Q  206 atcattactaaatgtctcttaaatata 232  Q
    |||||||||||||||||||||||||||    
T  5720011 atcattactaaatgtctcttaaatata 5720037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 9205410 - 9205640
Alignment:
Q  10 tgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatattttt-ct--ctatttgtgtccaaataatagtaaatga 106  Q
    ||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||  |||| ||||| ||  |||||||  |||||| ||||||||||||    
T  9205410 tgcaaagaaatatagaaagaaataaaattataacataaactaacttcggagtttcacccattttttttcttcctatttgcatccaaagaatagtaaatga 9205509  T
Q  107 cttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaa 206  Q
    |||||||| ||||||||||||| | || |||||  |||| ||||||||||||||||||||||| |||||| |||||||||| | ||| | |||| |||||    
T  9205510 cttgatctatttatagtgtatagtaaagttcatgctcttgtagaaataattaaatagtttaagaattataaaattttaaaagctcttcagaattttagaa 9205609  T
Q  207 tcattactaaatgtctcttaaatataccaat 237  Q
    | |||||||||||||||||||||||| ||||    
T  9205610 ttattactaaatgtctcttaaatatatcaat 9205640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 9287327 - 9287564
Alignment:
Q  9 atgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatgact 108  Q
    |||| ||||||||||||||||| |||||  | ||||||||| ||||| |||||||  |||||||||||| |||||||  |||||||| ||||||||||||    
T  9287327 atgccaagaaatatggaaagaagtagaactataacataaaccaactttggagtttgaaccatatttttc-ctatttgcatccaaatactagtaaatgact 9287425  T
Q  109 tgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatc 208  Q
    |||||||||||||||||||||| || |  ||  ||||| ||||||||||||||||||||||||||||| |||||||| |  | || | |||| || |||     
T  9287426 tgatctctttatagtgtataataaaat--atggtcttagagaaataattaaatagtttaagcattataaaattttaagattcattcagaattttataatt 9287523  T
Q  209 attactaaatgtctcttaaatataccaatctgttatttttg 249  Q
    ||||||||||||| |||||||||| |||| |||||||||||    
T  9287524 attactaaatgtcacttaaatatatcaatgtgttatttttg 9287564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 9196017 - 9196206
Alignment:
Q  42 acataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatgacttgatctctttatagtgtataatcaatttcataa 141  Q
    |||||| |||||||||||||||| |||||||||||  |||||||  |||||| |||||||||| ||||||| ||||||||||||||| | || |||||      
T  9196017 acataatctaacttcggagtttcaaccatattttttcctatttgcatccaaagaatagtaaataacttgatttctttatagtgtatagtaaagttcatgg 9196116  T
Q  142 tcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatat 231  Q
    ||||||||||||||||||||||||||||||  ||| |||||||||| | ||||| |||| || ||| |||||||||||||||||||||||    
T  9196117 tcttatagaaataattaaatagtttaagcaaaataaaattttaaaagctctttagaattttataattattactaaatgtctcttaaatat 9196206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 9209629 - 9209859
Alignment:
Q  10 tgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatattttt-ct--ctatttgtgtccaaataatagtaaatga 106  Q
    ||||||||||||| || ||||||| ||| | ||||||||||||||||||||||||  || | ||||| ||  |||||||  |||||| ||||||||||||    
T  9209629 tgcaaagaaatatagagagaaataaaattataacataaactaacttcggagtttcaccctttttttttcttcctatttgcatccaaagaatagtaaatga 9209728  T
Q  107 cttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaa 206  Q
    |||||||| ||||||||||||| | || |||||  |||| ||||||||||||||||||||||| |||||| |||||||||| | ||| | |||| |||||    
T  9209729 cttgatctatttatagtgtatagtaaagttcatgctcttgtagaaataattaaatagtttaagaattataaaattttaaaagctcttcagaattttagaa 9209828  T
Q  207 tcattactaaatgtctcttaaatataccaat 237  Q
    | ||||| |||||||||||||||||| ||||    
T  9209829 ttattacgaaatgtctcttaaatatatcaat 9209859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 9244891 - 9245125
Alignment:
Q  12 caaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatgacttga 111  Q
    ||||||||||| |||| || || ||| | || |||||||||||||||| |||| |||||||||||  |||||||  ||||||||||||||||||||| ||    
T  9244891 caaagaaatatagaaaaaattaaaattataaaataaactaacttcggaatttcaaccatattttttcctatttgcatccaaataatagtaaatgactcga 9244990  T
Q  112 tctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaacccttt-aaaattctagaatcat 210  Q
    |||||||||||||||| || || |||||  ||||| |||||||||||||||||||||| |||||| ||||| |||| |||||| | | || || ||| ||    
T  9244991 tctctttatagtgtat-ataaagttcatggtcttagagaaataattaaatagtttaagaattataaaatttgaaaagccctttcagatttttaaaattat 9245089  T
Q  211 tactaaatgtctcttaaatataccaatctgttattt 246  Q
    |||||||||||||| ||||||| || | ||||||||    
T  9245090 tactaaatgtctctcaaatatatcattgtgttattt 9245125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 5768460 - 5768211
Alignment:
Q  1 atactattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttct------ctatttgtgtccaaat 94  Q
    |||||||||||| |||||||||||||  ||||||||| | ||||||||| |||||   |||||| ||||||||||| |      |||||||  || ||||    
T  5768460 atactattatgccaagaaatatggaataaaatagaatcagaacataaaccaactttaaagtttcaaccatatttttttttctttctatttgcatctaaat 5768361  T
Q  95 aatagtaaatgacttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaacccttt 194  Q
    ||||||||||||||||||||||||||| |||||||   | || ||  ||||||| ||||||||||||  ||||||||||||| ||||||||||||||||     
T  5768360 aatagtaaatgacttgatctctttataatgtataa---agtttatggtcttataaaaataattaaatgatttaagcattataaaattttaaaaacccttc 5768264  T
Q  195 aaaattctagaatcattactaaatgtctcttaaatataccaatctgttatttt 247  Q
    | ||   ||||||||| ||||| | |||| |||||||| ||||  ||||||||    
T  5768263 ataacattagaatcatcactaattatctcataaatatatcaataagttatttt 5768211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 193
Target Start/End: Complemental strand, 5748921 - 5748737
Alignment:
Q  6 attatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatg 105  Q
    ||||||| ||| |||||| ||||||||||||  ||||||||||| | |||  ||||||   ||||||||||  ||| |||  || ||| | |||||||||    
T  5748921 attatgctaaggaatatgaaaagaaatagaactaaaacataaaccatcttaagagttttagccatattttttcctacttgcatctaaacattagtaaatg 5748822  T
Q  106 acttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctt 193  Q
    ||||||||||||||||||||||||   | ||||| |||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  5748821 acttgatctctttatagtgtataa---agttcatgatcttataaaaataattaaatagtttaagcattatgaaattttaaaaaccctt 5748737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 5761919 - 5761671
Alignment:
Q  1 atactattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttct-----ctatttgtgtccaaata 95  Q
    |||||||||||| |||||||||||||  ||||||| | | ||||||||| |||||   |||||| ||||||||||| |     |||||||  || |||||    
T  5761919 atactattatgccaagaaatatggaataaaatagattcagaacataaaccaactttaaagtttcaaccatattttttttctttctatttgcatctaaata 5761820  T
Q  96 atagtaaatgacttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaacccttta 195  Q
    |||||||||||||||||||||||||| ||||||   || || ||  ||||||| ||||||||||||  ||||||||||||| |||||||||||||||  |    
T  5761819 atagtaaatgacttgatctctttataatgtata---aagtttatggtcttataaaaataattaaatgatttaagcattataaaattttaaaaaccctcca 5761723  T
Q  196 aaattctagaatcattactaaatgtctcttaaatataccaatctgttatttt 247  Q
     ||   ||||||||| ||||| | ||||||||||||| ||||  ||||||||    
T  5761722 taacattagaatcatcactaattatctcttaaatatatcaataagttatttt 5761671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 9246074 - 9246215
Alignment:
Q  13 aaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatgacttgat 112  Q
    |||||||||| |||||||||| ||  | ||||||||| |||||| ||||||| |||||||||||  |||||||  |||||||||||||||||||||||||    
T  9246074 aaagaaatatagaaagaaataaaagtataacataaacaaacttcagagtttcaaccatattttttcctatttgcatccaaataatagtaaatgacttgat 9246173  T
Q  113 ctctttatagtgtataatcaatttcataatcttatagaaata 154  Q
    |||||||||||||||| | || |||||  |||||||||||||    
T  9246174 ctctttatagtgtatagtaaagttcatggtcttatagaaata 9246215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 5766216 - 5765967
Alignment:
Q  1 atactattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttct------ctatttgtgtccaaat 94  Q
    |||||||||||| |||||||||||||  ||||||||| | ||||||||| |||||   |||||| ||||||||||| |      ||||||   || ||||    
T  5766216 atactattatgccaagaaatatggaataaaatagaatcagaacataaaccaactttaaagtttcaaccatatttttttttctttctatttacatctaaat 5766117  T
Q  95 aatagtaaatgacttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaacccttt 194  Q
    ||||||||||||||||||||||||||| |||||||   | || ||  ||||||| ||||||||||||  ||||||||||||| ||||||||||||||||     
T  5766116 aatagtaaatgacttgatctctttataatgtataa---agtttatggtcttataaaaataattaaatgatttaagcattataaaattttaaaaacccttc 5766020  T
Q  195 aaaattctagaatcattactaaatgtctcttaaatataccaatctgttatttt 247  Q
    | ||   ||||||||| ||||| | |||| |||||||| ||||  ||||||||    
T  5766019 ataacattagaatcatcactaattatctcataaatatatcaataagttatttt 5765967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 5764052 - 5763804
Alignment:
Q  1 atactattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttt-----tctctatttgtgtccaaata 95  Q
    |||||||||||| |||||||||||||  ||||||||| | |||||||||||||||   |||||| ||||||||||     | ||||||||  |  |||||    
T  5764052 atactattatgccaagaaatatggaataaaatagaatcagaacataaactaactttaaagtttcgaccatattttttttctttctatttgcatgtaaata 5763953  T
Q  96 atagtaaatgacttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaacccttta 195  Q
    |||||||||||||||||||||||||| ||||||   || || ||  ||||||| ||||||||||||  ||||||||||||| |||||| ||||||||| |    
T  5763952 atagtaaatgacttgatctctttataatgtata---aagtttatggtcttataaaaataattaaatgatttaagcattataaaatttttaaaacccttca 5763856  T
Q  196 aaattctagaatcattactaaatgtctcttaaatataccaatctgttatttt 247  Q
     ||   |||| | || ||||| | ||||||||||||| ||||  ||||||||    
T  5763855 taacattagatttatcactaattatctcttaaatatatcaataagttatttt 5763804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 5728056 - 5727807
Alignment:
Q  1 atactattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttct------ctatttgtgtccaaat 94  Q
    |||||||||||| |||||||||||||  ||||| ||| | ||||||||| |||||   |||||| ||||||||||| |      |||||||  |  ||||    
T  5728056 atactattatgccaagaaatatggaataaaatataatcagaacataaaccaactttaaagtttcaaccatatttttttttctttctatttgcatgtaaat 5727957  T
Q  95 aatagtaaatgacttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaacccttt 194  Q
    ||||||||||||||||||||||||||| |||||||   | || ||  ||||||| ||||||||||||| ||||||||||||| | ||||||||||||||     
T  5727956 aatagtaaatgacttgatctctttataatgtataa---agtttatggtcttataaaaataattaaataatttaagcattataaatttttaaaaacccttc 5727860  T
Q  195 aaaattctagaatcattactaaatgtctcttaaatataccaatctgttatttt 247  Q
    | ||   ||||||||| ||||| | | ||||||||||| ||||  ||||||||    
T  5727859 ataacattagaatcatcactaattatttcttaaatatatcaataagttatttt 5727807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 9202363 - 9202465
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttattt 246  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| ||||||||||||| |||| || |||||    
T  9202363 tagaaataattaaatagtttaagcattataaatttttaaaggctcttcataattttagaattattagtaaatatctcttaaatatatcaatgtgctattt 9202462  T
Q  247 ttg 249  Q
    |||    
T  9202463 ttg 9202465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 9202876 - 9202974
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttatt 245  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| ||||||||||||| |||| |||||||    
T  9202876 tagaaataattaaatagtttaagcattataaatttttaaatgctcttcataattttagaattattagtaaatatctcttaaatatatcaatgtgttatt 9202974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 9206071 - 9206173
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttattt 246  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| || |||||||||| |||| ||||||||    
T  9206071 tagaaataattaaatagtttaagcattataaatttttaaaggctcttcataattttagaattattaataaatatcacttaaatatatcaatgtgttattt 9206170  T
Q  247 ttg 249  Q
    |||    
T  9206171 ttg 9206173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 9206585 - 9206683
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttatt 245  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| ||||||||||||| |||| |||||||    
T  9206585 tagaaataattaaatagtttaagcattataaatttttaaatgctcttcataattttagaattattagtaaatatctcttaaatatatcaatgtgttatt 9206683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 9210291 - 9210393
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttattt 246  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| || |||||||||| |||| ||||||||    
T  9210291 tagaaataattaaatagtttaagcattataaatttttaaaggctcttcataattttagaattattagtaaatatcacttaaatatatcaatgtgttattt 9210390  T
Q  247 ttg 249  Q
    |||    
T  9210391 ttg 9210393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 9218791 - 9218893
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttattt 246  Q
    ||||||||||||||||||||||| |||||| | |||||||  | ||| | |||| |||||| |||| ||||| ||||||||||||| |||| ||||||||    
T  9218791 tagaaataattaaatagtttaagaattataaatttttaaaggctcttcataattttagaattattagtaaatatctcttaaatatatcaatgtgttattt 9218890  T
Q  247 ttg 249  Q
    |||    
T  9218891 ttg 9218893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 9211830 - 9211931
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttattt 246  Q
    |||||||||||||||||||||||||||||| | |||||| | | ||| | |||| || ||| |||| ||||| || |||||||||| |||| ||||||||    
T  9211830 tagaaataattaaatagtttaagcattataaatttttaacagctcttcataattttaaaattattagtaaatatcacttaaatatatcaatgtgttattt 9211929  T
Q  247 tt 248  Q
    ||    
T  9211930 tt 9211931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 9210805 - 9210903
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttatt 245  Q
    |||||||||||||||||||||||||||||| | |||| ||  | ||| | |||| |||||| |||| ||||| ||||| ||||||| |||| |||||||    
T  9210805 tagaaataattaaatagtttaagcattataaatttttcaatgctcttcataattttagaattattagtaaatatctctaaaatatatcaatgtgttatt 9210903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 9218277 - 9218379
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttattt 246  Q
    |||||||||||||||||||||||||||||| | |||||| | | ||| | ||||  | ||| |||| ||||| ||||||| ||||| |||| ||||||||    
T  9218277 tagaaataattaaatagtttaagcattatatatttttaacagctcttcataatttaaaaattattagtaaatatctcttatatatatcaatgtgttattt 9218376  T
Q  247 ttg 249  Q
    |||    
T  9218377 ttg 9218379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 5678861 - 5678724
Alignment:
Q  1 atactattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagt 100  Q
    |||||||||||| ||||||||||| |||||||||||| | || |||||||||||| ||| |||  ||| ||||||| |||          ||||||||||    
T  5678861 atactattatgctaagaaatatgggaagaaatagaattagaatataaactaactttggacttttaacc-tatttttttct----------aaataatagt 5678773  T
Q  101 aaatgacttgatctctttatagtgtataatcaatttcataatcttatag 149  Q
    |||||  || |||||||||| ||||||||| ||||||||  ||||||||    
T  5678772 aaatgttttaatctctttatcgtgtataataaatttcattgtcttatag 5678724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 15465480 - 15465556
Alignment:
Q  1 atactattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttc 77  Q
    |||||||||||  |||||||||||||| ||  ||||| | ||||||||| |||||| |||||||  |||||||||||    
T  15465480 atactattatgacaagaaatatggaaataagcagaatcagaacataaacaaacttcagagtttcagccatatttttc 15465556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 5675050 - 5675005
Alignment:
Q  197 aattctagaatcattactaaatgtctcttaaatataccaatctgtt 242  Q
    ||||||||||||||||| |||| ||||||||||||| |||| ||||    
T  5675050 aattctagaatcattaccaaatatctcttaaatatatcaatgtgtt 5675005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 10980608 - 10980668
Alignment:
Q  16 gaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatattttt 76  Q
    |||||||||||||||||||||  | |||||||||  ||||  ||||||| |||||||||||    
T  10980608 gaaatatggaaagaaatagaaacataacataaacatactttagagtttcaaccatattttt 10980668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1826 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold1826
Description:

Target: scaffold1826; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 130 - 366
Alignment:
Q  13 aaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatgacttgat 112  Q
    |||||||||| |||||||||| ||  | |||||||||||||||| ||||||| |||||||||||  |||||||  ||||||||||| |||||||||||||    
T  130 aaagaaatatagaaagaaataaaagtataacataaactaacttctgagtttcaaccatattttttcctatttgcatccaaataataataaatgacttgat 229  T
Q  113 ctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcatta 212  Q
    |||||||||||||||| | || |||||  ||||||||||||||||||||||||||||||||||| |||||||||| | |||   |||| || ||||||||    
T  230 ctctttatagtgtatagtaaagttcatggtcttatagaaataattaaatagtttaagcattataaaattttaaaagctcttctgaattttataatcatta 329  T
Q  213 ctaaatgtctcttaaatataccaatctgttatttttg 249  Q
    ||||||||| |||||||||| |||| |||||||||||    
T  330 ctaaatgtcacttaaatatatcaatgtgttatttttg 366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 108; Significance: 3e-54; HSPs: 22)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 3493 - 3723
Alignment:
Q  10 tgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatattttt-ct--ctatttgtgtccaaataatagtaaatga 106  Q
    ||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||  |||| ||||| ||  |||||||  |||||| ||||||||||||    
T  3493 tgcaaagaaatatagaaagaaataaaattataacataaactaacttcggagtttcacccattttttttcttcctatttgcatccaaagaatagtaaatga 3592  T
Q  107 cttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaa 206  Q
    |||||||| ||||||||||||| | || |||||  |||| ||||||||||||||||||||||| |||||| |||||||||| | ||| | |||| |||||    
T  3593 cttgatctatttatagtgtatagtaaagttcatgctcttgtagaaataattaaatagtttaagaattataaaattttaaaagctcttcagaattttagaa 3692  T
Q  207 tcattactaaatgtctcttaaatataccaat 237  Q
    | |||||||||||||||||||||||| ||||    
T  3693 ttattactaaatgtctcttaaatatatcaat 3723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 7708 - 7938
Alignment:
Q  10 tgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatattttt-ct--ctatttgtgtccaaataatagtaaatga 106  Q
    ||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||  |||| ||||| ||  |||||||  |||||| ||||||||||||    
T  7708 tgcaaagaaatatagaaagaaataaaattataacataaactaacttcggagtttcacccattttttttcttcctatttgcatccaaagaatagtaaatga 7807  T
Q  107 cttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaa 206  Q
    |||||||| ||||||||||||| | || |||||  |||| ||||||||||||||||||||||| |||||| |||||||||| | ||| | |||| |||||    
T  7808 cttgatctatttatagtgtatagtaaagttcatgctcttgtagaaataattaaatagtttaagaattataaaattttaaaagctcttcagaattttagaa 7907  T
Q  207 tcattactaaatgtctcttaaatataccaat 237  Q
    | |||||||||||||||||||||||| ||||    
T  7908 ttattactaaatgtctcttaaatatatcaat 7938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 11923 - 12153
Alignment:
Q  10 tgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatattttt-ct--ctatttgtgtccaaataatagtaaatga 106  Q
    ||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||  |||| ||||| ||  |||||||  |||||| ||||||||||||    
T  11923 tgcaaagaaatatagaaagaaataaaattataacataaactaacttcggagtttcacccattttttttcttcctatttgcatccaaagaatagtaaatga 12022  T
Q  107 cttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaa 206  Q
    |||||||| ||||||||||||| | || |||||  |||| ||||||||||||||||||||||| |||||| |||||||||| | ||| | |||| |||||    
T  12023 cttgatctatttatagtgtatagtaaagttcatgctcttgtagaaataattaaatagtttaagaattataaaattttaaaagctcttcagaattttagaa 12122  T
Q  207 tcattactaaatgtctcttaaatataccaat 237  Q
    | |||||||||||||||||||||||| ||||    
T  12123 ttattactaaatgtctcttaaatatatcaat 12153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 16138 - 16368
Alignment:
Q  10 tgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatattttt-ct--ctatttgtgtccaaataatagtaaatga 106  Q
    ||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||  |||| ||||| ||  |||||||  |||||| ||||||||||||    
T  16138 tgcaaagaaatatagaaagaaataaaattataacataaactaacttcggagtttcacccattttttttcttcctatttgcatccaaagaatagtaaatga 16237  T
Q  107 cttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaa 206  Q
    |||||||| ||||||||||||| | || |||||  |||| ||||||||||||||||||||||| |||||| |||||||||| | ||| | |||| |||||    
T  16238 cttgatctatttatagtgtatagtaaagttcatgctcttgtagaaataattaaatagtttaagaattataaaattttaaaagctcttcagaattttagaa 16337  T
Q  207 tcattactaaatgtctcttaaatataccaat 237  Q
    | |||||||||||||||||||||||| ||||    
T  16338 ttattactaaatgtctcttaaatatatcaat 16368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 20353 - 20583
Alignment:
Q  10 tgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatattttt-ct--ctatttgtgtccaaataatagtaaatga 106  Q
    ||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||  |||| ||||| ||  |||||||  |||||| ||||||||||||    
T  20353 tgcaaagaaatatagaaagaaataaaattataacataaactaacttcggagtttcacccattttttttcttcctatttgcatccaaagaatagtaaatga 20452  T
Q  107 cttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaa 206  Q
    |||||||| ||||||||||||| | || |||||  |||| ||||||||||||||||||||||| |||||| |||||||||| | ||| | |||| |||||    
T  20453 cttgatctatttatagtgtatagtaaagttcatgctcttgtagaaataattaaatagtttaagaattataaaattttaaaagctcttcagaattttagaa 20552  T
Q  207 tcattactaaatgtctcttaaatataccaat 237  Q
    | |||||||||||||||||||||||| ||||    
T  20553 ttattactaaatgtctcttaaatatatcaat 20583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 24568 - 24798
Alignment:
Q  10 tgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatattttt-ct--ctatttgtgtccaaataatagtaaatga 106  Q
    ||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||  |||| ||||| ||  |||||||  |||||| ||||||||||||    
T  24568 tgcaaagaaatatagaaagaaataaaattataacataaactaacttcggagtttcacccattttttttcttcctatttgcatccaaagaatagtaaatga 24667  T
Q  107 cttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaa 206  Q
    |||||||| ||||||||||||| | || |||||  |||| ||||||||||||||||||||||| |||||| |||||||||| | ||| | |||| |||||    
T  24668 cttgatctatttatagtgtatagtaaagttcatgctcttgtagaaataattaaatagtttaagaattataaaattttaaaagctcttcagaattttagaa 24767  T
Q  207 tcattactaaatgtctcttaaatataccaat 237  Q
    | |||||||||||||||||||||||| ||||    
T  24768 ttattactaaatgtctcttaaatatatcaat 24798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 28783 - 29013
Alignment:
Q  10 tgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatattttt-ct--ctatttgtgtccaaataatagtaaatga 106  Q
    ||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||  |||| ||||| ||  |||||||  |||||| ||||||||||||    
T  28783 tgcaaagaaatatagaaagaaataaaattataacataaactaacttcggagtttcacccattttttttcttcctatttgcatccaaagaatagtaaatga 28882  T
Q  107 cttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaa 206  Q
    |||||||| ||||||||||||| | || |||||  |||| ||||||||||||||||||||||| |||||| |||||||||| | ||| | |||| |||||    
T  28883 cttgatctatttatagtgtatagtaaagttcatgctcttgtagaaataattaaatagtttaagaattataaaattttaaaagctcttcagaattttagaa 28982  T
Q  207 tcattactaaatgtctcttaaatataccaat 237  Q
    | |||||||||||||||||||||||| ||||    
T  28983 ttattactaaatgtctcttaaatatatcaat 29013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 445 - 547
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttattt 246  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| ||||||||||||| |||| || |||||    
T  445 tagaaataattaaatagtttaagcattataaatttttaaaggctcttcataattttagaattattagtaaatatctcttaaatatatcaatgtgctattt 544  T
Q  247 ttg 249  Q
    |||    
T  545 ttg 547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 958 - 1056
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttatt 245  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| ||||||||||||| |||| |||||||    
T  958 tagaaataattaaatagtttaagcattataaatttttaaatgctcttcataattttagaattattagtaaatatctcttaaatatatcaatgtgttatt 1056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 4152 - 4254
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttattt 246  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| || |||||||||| |||| ||||||||    
T  4152 tagaaataattaaatagtttaagcattataaatttttaaaggctcttcataattttagaattattaataaatatcacttaaatatatcaatgtgttattt 4251  T
Q  247 ttg 249  Q
    |||    
T  4252 ttg 4254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 4665 - 4763
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttatt 245  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| ||||||||||||| |||| |||||||    
T  4665 tagaaataattaaatagtttaagcattataaatttttaaatgctcttcataattttagaattattagtaaatatctcttaaatatatcaatgtgttatt 4763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 8367 - 8469
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttattt 246  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| || |||||||||| |||| ||||||||    
T  8367 tagaaataattaaatagtttaagcattataaatttttaaaggctcttcataattttagaattattaataaatatcacttaaatatatcaatgtgttattt 8466  T
Q  247 ttg 249  Q
    |||    
T  8467 ttg 8469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 8880 - 8978
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttatt 245  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| ||||||||||||| |||| |||||||    
T  8880 tagaaataattaaatagtttaagcattataaatttttaaatgctcttcataattttagaattattagtaaatatctcttaaatatatcaatgtgttatt 8978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 12582 - 12684
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttattt 246  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| || |||||||||| |||| ||||||||    
T  12582 tagaaataattaaatagtttaagcattataaatttttaaaggctcttcataattttagaattattaataaatatcacttaaatatatcaatgtgttattt 12681  T
Q  247 ttg 249  Q
    |||    
T  12682 ttg 12684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 13095 - 13193
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttatt 245  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| ||||||||||||| |||| |||||||    
T  13095 tagaaataattaaatagtttaagcattataaatttttaaatgctcttcataattttagaattattagtaaatatctcttaaatatatcaatgtgttatt 13193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 16797 - 16899
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttattt 246  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| || |||||||||| |||| ||||||||    
T  16797 tagaaataattaaatagtttaagcattataaatttttaaaggctcttcataattttagaattattaataaatatcacttaaatatatcaatgtgttattt 16896  T
Q  247 ttg 249  Q
    |||    
T  16897 ttg 16899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 17310 - 17408
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttatt 245  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| ||||||||||||| |||| |||||||    
T  17310 tagaaataattaaatagtttaagcattataaatttttaaatgctcttcataattttagaattattagtaaatatctcttaaatatatcaatgtgttatt 17408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 21012 - 21114
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttattt 246  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| || |||||||||| |||| ||||||||    
T  21012 tagaaataattaaatagtttaagcattataaatttttaaaggctcttcataattttagaattattaataaatatcacttaaatatatcaatgtgttattt 21111  T
Q  247 ttg 249  Q
    |||    
T  21112 ttg 21114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 21525 - 21623
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttatt 245  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| ||||||||||||| |||| |||||||    
T  21525 tagaaataattaaatagtttaagcattataaatttttaaatgctcttcataattttagaattattagtaaatatctcttaaatatatcaatgtgttatt 21623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 25227 - 25329
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttattt 246  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| || |||||||||| |||| ||||||||    
T  25227 tagaaataattaaatagtttaagcattataaatttttaaaggctcttcataattttagaattattaataaatatcacttaaatatatcaatgtgttattt 25326  T
Q  247 ttg 249  Q
    |||    
T  25327 ttg 25329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 25740 - 25838
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttatt 245  Q
    |||||||||||||||||||||||||||||| | |||||||  | ||| | |||| |||||| |||| ||||| ||||||||||||| |||| |||||||    
T  25740 tagaaataattaaatagtttaagcattataaatttttaaatgctcttcataattttagaattattagtaaatatctcttaaatatatcaatgtgttatt 25838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 29442 - 29544
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttattt 246  Q
    ||||||||||||||||||||||| |||||| | |||||||  | ||| | |||| |||||| |||| ||||| ||||||||||||| |||| ||||||||    
T  29442 tagaaataattaaatagtttaagaattataaatttttaaaggctcttcataattttagaattattagtaaatatctcttaaatatatcaatgtgttattt 29541  T
Q  247 ttg 249  Q
    |||    
T  29542 ttg 29544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 4527 - 4755
Alignment:
Q  19 atatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatgacttgatctcttt 118  Q
    ||||||||||||||||||| | |||||||||||||||||||||||  |||||||||||  |||||||   | |||||||||||||||| ||| |||||||    
T  4527 atatggaaagaaatagaattagaacataaactaacttcggagttttaaccatatttttaactatttgcaccgaaataatagtaaatgagttggtctcttt 4626  T
Q  119 atagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaat 218  Q
    ||||||||| || |||| |||  || ||||||||||||||||||||| ||||||| || |||||||||| |||||   |||| ||||||||||||| |||    
T  4627 atagtgtatcataaattgcatggtcctatagaaataattaaatagttgaagcattttaaaattttaaaaccccttcggaattttagaatcattactcaat 4726  T
Q  219 gtctcttaaatataccaatctgttatttt 247  Q
    || |||||||||||  ||| |||||||||    
T  4727 gtatcttaaatatattaatgtgttatttt 4755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 10407 - 10552
Alignment:
Q  5 tattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttct-ctatttgtgtccaaataatagtaaa 103  Q
    |||||||| |||||||||||||||||||||||||| |||||| ||||| |||| | |||  ||||||||||| | |||||||  |||||||||||||||     
T  10407 tattatgctaagaaatatggaaagaaatagaataagaacatatactaaattcgaacttttaaccatatttttttcctatttgcatccaaataatagtaat 10506  T
Q  104 tgacttgatctctttatagtgtataatcaatttcataatcttatag 149  Q
    ||| || |||||||| | ||||||||| ||||||||  ||||||||    
T  10507 tgagttaatctctttgtcgtgtataataaatttcattgtcttatag 10552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 13258 - 13358
Alignment:
Q  148 agaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttatttt 247  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||| | |||||||||||||||  ||||||||||||||||||| |||| |||| ||||    
T  13258 agaaataattaaatagtttaagcattataaaattttaaaa-cccttcagaattctagaatcattcataaatgtctcttaaatatatcaatgtgttctttt 13356  T
Q  248 tg 249  Q
    ||    
T  13357 tg 13358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 8896 - 8989
Alignment:
Q  148 agaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgtt 242  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||| | |||||||||||||||| | ||||||| ||||||||| |||| ||||    
T  8896 agaaataattaaatagtttaagcattataaaatttt-aaaacccttcagaattctagaatcattaattaatgtctattaaatatatcaatgtgtt 8989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 7399 - 7530
Alignment:
Q  19 atatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctc-tatttgtgtccaaataatagtaaatgacttgatctctt 117  Q
    ||||||||||||||||||| | ||||||| ||||||||| | |||  |||||||  || || ||||||  || ||||||||||||||||||| |||||||    
T  7399 atatggaaagaaatagaattagaacataagctaacttcgtacttttaaccatatacttttcatatttgcatcaaaataatagtaaatgacttaatctctt 7498  T
Q  118 tatagtgtataatcaatttcataatcttatag 149  Q
    ||| ||||||||| ||||||||  ||||||||    
T  7499 tatcgtgtataataaatttcattgtcttatag 7530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 18536216 - 18535985
Alignment:
Q  17 aaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatgacttgatctct 116  Q
    ||||||||||||||||||||| | |||||||||| ||||||||||||  |||||||||||  |||||||  ||||||||||||||||||| ||| |||||    
T  18536216 aaatatggaaagaaatagaattagaacataaactgacttcggagttttaaccatatttttaactatttgcatccaaataatagtaaatgagttggtctct 18536117  T
Q  117 ttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaa 216  Q
    ||||| |||||||| ||||  ||  ||| |||||||||||||||||||| ||||||| || ||||||||||||||||   ||||  |||||||||| | |    
T  18536116 ttatactgtataataaattgaattgtctcatagaaataattaaatagttgaagcattttaaaattttaaaaacccttcggaatttgagaatcattattca 18536017  T
Q  217 atgtctcttaaatataccaatctgttattttt 248  Q
    |||| |||||||||||  ||| ||||||||||    
T  18536016 atgtatcttaaatatattaatgtgttattttt 18535985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 18550476 - 18550249
Alignment:
Q  15 agaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatgacttgatct 114  Q
    ||||||||| |||||| |||||| | ||||||||| || ||||| ||||  ||||||||||| || |||||  |||||||||||||||||||||||||||    
T  18550476 agaaatatgaaaagaattagaattagaacataaaccaatttcggtgttttaaccatattttt-tcaatttgcatccaaataatagtaaatgacttgatct 18550378  T
Q  115 ctttatagtgtataatcaatttcat--aatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcatta 212  Q
     ||||||||||||||  ||||||||    |||||  |||||||||||||| ||||||||| ||| ||||||| ||||  || ||||||||| |||||||     
T  18550377 atttatagtgtataagaaatttcatggtctcttaatgaaataattaaataatttaagcatgata-aattttataaacagttcaaaattctaaaatcattt 18550279  T
Q  213 ctaaatgtctcttaaatataccaatctgtt 242  Q
    |||||||||  ||||||||| |||| ||||    
T  18550278 ctaaatgtcctttaaatatatcaatgtgtt 18550249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 193
Target Start/End: Complemental strand, 18678959 - 18678775
Alignment:
Q  6 attatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatg 105  Q
    ||||||| ||| |||||| ||||||||||||  ||||||||||| | |||  ||||||   ||||||||||  ||| |||  || ||| | |||||||||    
T  18678959 attatgctaaggaatatgaaaagaaatagaactaaaacataaaccatcttaagagttttagccatattttttcctacttgcatctaaacattagtaaatg 18678860  T
Q  106 acttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctt 193  Q
    ||||||||||||||||||||||||   | ||||| |||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  18678859 acttgatctctttatagtgtataa---agttcatgatcttataaaaataattaaatagtttaagcattatgaaattttaaaaaccctt 18678775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 18651826 - 18651577
Alignment:
Q  1 atactattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttct------ctatttgtgtccaaat 94  Q
    |||||||||||| |||||||||||||  ||||| ||| | ||||||||| |||||   |||||| ||||||||||| |      |||||||  |  ||||    
T  18651826 atactattatgccaagaaatatggaataaaatataatcagaacataaaccaactttaaagtttcaaccatatttttttttctttctatttgcatgtaaat 18651727  T
Q  95 aatagtaaatgacttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaacccttt 194  Q
    ||||||||||||||||||||||||||| |||||||   | || ||  ||||||| ||||||||||||| ||||||||||||| | ||||||||||||||     
T  18651726 aatagtaaatgacttgatctctttataatgtataa---agtttatggtcttataaaaataattaaataatttaagcattataaatttttaaaaacccttc 18651630  T
Q  195 aaaattctagaatcattactaaatgtctcttaaatataccaatctgttatttt 247  Q
    | ||   ||||||||| ||||| | | ||||||||||| ||||  ||||||||    
T  18651629 ataacattagaatcatcactaattatttcttaaatatatcaataagttatttt 18651577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 247
Target Start/End: Complemental strand, 18691156 - 18691003
Alignment:
Q  91 aaataatagtaaatgacttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaacc 190  Q
    ||||||||||||||||||||||||||||||| |||||||   | || ||  ||||||| ||||||||||||  ||||||||||||| |||||||||||||    
T  18691156 aaataatagtaaatgacttgatctctttataatgtataa---agtttatggtcttataaaaataattaaatgatttaagcattataaaattttaaaaacc 18691060  T
Q  191 ctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttatttt 247  Q
    ||| | ||   ||||||||| ||||| | ||||||||||||| ||||  ||||||||    
T  18691059 cttcataacattagaatcatcactaattatctcttaaatatatcaataagttatttt 18691003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 18549257 - 18549189
Alignment:
Q  180 ttttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttattttt 248  Q
    |||||||||||||| | ||||||||||||||||| |||||||  | ||||||| |||| ||||||||||    
T  18549257 ttttaaaaacccttcagaattctagaatcattacaaaatgtccttaaaatatatcaatgtgttattttt 18549189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 5217096 - 5217052
Alignment:
Q  1 atactattatgcaaagaaatatggaaagaaatagaataaaaacat 45  Q
    ||||||||||| | ||||||||||||||||||||||| |||||||    
T  5217096 atactattatggatagaaatatggaaagaaatagaattaaaacat 5217052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 2128 - 1890
Alignment:
Q  12 caaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatgacttga 111  Q
    ||||||||||| |||| || || ||| | ||||||||||||||||||| |||| |||||||||||  |||||||  ||||||||||||||||||||| ||    
T  2128 caaagaaatatagaaaaaagtaaaattataacataaactaacttcggaatttcaaccatattttttcctatttgcatccaaataatagtaaatgactcga 2029  T
Q  112 tctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaacccttt-aaaattctagaatcat 210  Q
    ||||||||||||||| | | || |||||  ||||| ||||||||||||||||||||| ||||||| ||||| |||| |||||| | |||| || ||| ||    
T  2028 tctctttatagtgtacagtaaagttcatggtcttagagaaataattaaatagtttaaacattataaaatttgaaaagccctttcagaattttaaaattat 1929  T
Q  211 tactaaatgtctcttaaatataccaatctgttatttttg 249  Q
    ||||| |||||||||||||||| || | | |||||||||    
T  1928 tactagatgtctcttaaatatatcactatattatttttg 1890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 86 - 1
Alignment:
Q  13 aaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataata 98  Q
    |||||||||| |||||||||| ||  | |||||||||||||||| ||||||| |||||||||||  |||||||  |||||||||||    
T  86 aaagaaatatagaaagaaataaaagtataacataaactaacttctgagtttcaaccatattttttcctatttgcatccaaataata 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 3682 - 3856
Alignment:
Q  13 aaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatgacttgat 112  Q
    |||||||||| |||||||||| |   | |||||||| ||||||| ||||||| ||||| |||||  ||||| |  |||||||||||||||||||||||||    
T  3682 aaagaaatatagaaagaaataaatgtataacataaattaacttcagagtttcaaccatcttttttcctattagcatccaaataatagtaaatgacttgat 3781  T
Q  113 ctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaa 187  Q
    |||||||||||||||| | || |||||  ||||||||||||||||||||||||||||||||||| ||||||||||    
T  3782 ctctttatagtgtatagtaaagttcatggtcttatagaaataattaaatagtttaagcattataaaattttaaaa 3856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1952 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold1952
Description:

Target: scaffold1952; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 100 - 249
Target Start/End: Original strand, 1 - 150
Alignment:
Q  100 taaatgacttgatctctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaat 199  Q
    ||||||||||||||||||||||||||||| | || |||||  ||||||||||||||||||||||||||||||||||| |||||||||| | ||| | |||    
T  1 taaatgacttgatctctttatagtgtatagtaaagttcatggtcttatagaaataattaaatagtttaagcattataaaattttaaaagctcttcagaat 100  T
Q  200 tctagaatcattactaaatgtctcttaaatataccaatctgttatttttg 249  Q
    | || ||| |||||||||| ||||||||||||| ||||||||||||||||    
T  101 tttaaaattattactaaatatctcttaaatatatcaatctgttatttttg 150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 146 - 249
Target Start/End: Original strand, 1903 - 2006
Alignment:
Q  146 atagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttatt 245  Q
    ||||||||||||||||||||||||||||||| | |||||||| | ||| | |||| || ||| |||| ||||| ||||||||||||| |||| |||||||    
T  1903 atagaaataattaaatagtttaagcattataaatttttaaaagctcttcataattttataattattagtaaatatctcttaaatatatcaatgtgttatt 2002  T
Q  246 tttg 249  Q
    ||||    
T  2003 tttg 2006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 249
Target Start/End: Original strand, 873 - 978
Alignment:
Q  144 ttatagaaataattaaatagtttaagcattatacaattttaaaaa-ccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgtt 242  Q
    ||||||||||||||||||||||||||||||||| | ||||||||| | ||| | |||| |||||| |||| ||||| ||||||||||||| |||| ||||    
T  873 ttatagaaataattaaatagtttaagcattata-atttttaaaaagctcttcataattttagaattattagtaaatatctcttaaatatatcaatgtgtt 971  T
Q  243 atttttg 249  Q
    |||||||    
T  972 atttttg 978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 1389 - 1491
Alignment:
Q  147 tagaaataattaaatagtttaagcattatacaattttaaaaaccctttaaaattctagaatcattactaaatgtctcttaaatataccaatctgttattt 246  Q
    |||||||||||||||||||||| ||||||| | |||||||| | ||| | |||| |  ||  |||| ||||| |||||||||||||  ||| | ||||||    
T  1389 tagaaataattaaatagtttaaacattataaatttttaaaagctcttcacaattttttaaatattagtaaatatctcttaaatatataaatgttttattt 1488  T
Q  247 ttg 249  Q
    |||    
T  1489 ttg 1491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 14589206 - 14589030
Alignment:
Q  14 aagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatgacttgatc 113  Q
    |||||||||||||||||||||||| ||||||||||| |||||| || |||| |||||||||||   ||||||  |  ||| | | ||| || | ||||||    
T  14589206 aagaaatatggaaagaaatagaatcaaaacataaaccaacttctgaatttcaaccatattttttcttatttggataaaaaaattggtagataatttgatc 14589107  T
Q  114 tctttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaagcattatacaattttaaaaaccctt 193  Q
    | |||||||||||||   || |||||   | |||| | | ||||||| ||||||||||||||  ||||||||||||||||    
T  14589106 tatttatagtgtata---aagttcatggacgtataaataaaattaaagagtttaagcattatgaaattttaaaaaccctt 14589030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 19307615 - 19307487
Alignment:
Q  1 atactattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagt 100  Q
    |||||||||||  |||||||| ||||||||||||||| | || |||||| ||||||  ||||||  ||||||||||  || ||||  || ||| |||  |    
T  19307615 atactattatgacaagaaataaggaaagaaatagaattagaatataaacaaacttcatagtttcatccatatttttacctttttgcatctaaaaaatcat 19307516  T
Q  101 aaatgacttgatctctttatagtgtataa 129  Q
    | |||| ||||||||||||||||||||||    
T  19307515 atatgatttgatctctttatagtgtataa 19307487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 1821728 - 1821657
Alignment:
Q  5 tattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatattttt 76  Q
    ||||||| ||||||||||||||| || |||||| | || |||||| |||||| ||||||| |||||||||||    
T  1821728 tattatgaaaagaaatatggaaataagtagaatcagaatataaacgaacttccgagtttcaaccatattttt 1821657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 1872374 - 1872436
Alignment:
Q  15 agaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttc 77  Q
    ||||||||||||| ||||||||| | ||||||||| |||||| |||||||  |||||||||||    
T  1872374 agaaatatggaaataaatagaatcagaacataaacaaacttcagagtttcagccatatttttc 1872436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 10258670 - 10258522
Alignment:
Q  17 aaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatgacttgatctct 116  Q
    |||||||||||||||| |||| | || |||||| |||||  |||||||  |||||||||||||| ||||  |  ||| | ||| | || |||| ||||||    
T  10258670 aaatatggaaagaaatcgaattagaagataaacaaactttagagtttcatccatatttttctctctttgcatataaaaagtagcatataacttaatctct 10258571  T
Q  117 ttatagtgtataatcaatttcataatcttatagaaataattaaatagtttaa 168  Q
    ||||||| ||||   ||||||||  ||||||| || ||| ||||||||||||    
T  10258570 ttatagtttata---aatttcatggtcttataaaattaaataaatagtttaa 10258522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1811738 - 1811814
Alignment:
Q  1 atactattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttc 77  Q
    ||||||| |||  |||||||||||||| ||||||||| | ||||||||  |||||| ||||||| ||||| ||||||    
T  1811738 atactatcatgacaagaaatatggaaacaaatagaatcataacataaataaacttcagagtttcaaccatttttttc 1811814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20331029 - 20331077
Alignment:
Q  1 atactattatgcaaagaaatatggaaagaaatagaataaaaacataaac 49  Q
    ||||| ||||| ||||||||||||||| ||||||||||| |||||||||    
T  20331029 atactgttatggaaagaaatatggaaataaatagaataagaacataaac 20331077  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 1841523 - 1841452
Alignment:
Q  5 tattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatattttt 76  Q
    ||||||| ||||||||||| ||| || |||||| | |  |||||| |||||||||||||| |||||||||||    
T  1841523 tattatgaaaagaaatatgtaaataagtagaatcagattataaacgaacttcggagtttcaaccatattttt 1841452  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 1851115 - 1851178
Alignment:
Q  14 aagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttc 77  Q
    ||||||||  |||| ||||||||| ||||||||||| |||||| |||||||  |||||||||||    
T  1851115 aagaaataatgaaataaatagaattaaaacataaacaaacttcagagtttcagccatatttttc 1851178  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 10292139 - 10292024
Alignment:
Q  14 aagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtccaaataatagtaaatgacttgatc 113  Q
    |||||| | |||||||||||| || | || |||||| |||||| ||||||   |||||||||||||| ||||  || ||| ||||  | |||| ||||||    
T  10292139 aagaaacaaggaaagaaatagtatcacaaaataaacaaacttcagagttttatccatatttttctctctttgcatctaaacaataacatatgatttgatc 10292040  T
Q  114 tctttatagtgtataa 129  Q
    | ||||||||||||||    
T  10292039 tttttatagtgtataa 10292024  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 1866325 - 1866378
Alignment:
Q  24 gaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttc 77  Q
    |||| ||||||||| ||||||||||| |||||| |||||||  |||||||||||    
T  1866325 gaaataaatagaatcaaaacataaacaaacttcagagtttcagccatatttttc 1866378  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 19394877 - 19395006
Alignment:
Q  1 atactattatgcaaagaaatatggaaagaaatagaataaaaacataaactaacttcggagtttccaccatatttttctctatttgtgtc-caaataatag 99  Q
    |||||||| ||  |||||| |||||||| |||||||| | | ||||||| |||||||||||||   ||||||||||  || ||||| ||  ||| |||||    
T  19394877 atactattttgataagaaagatggaaagtaatagaatcatagcataaacaaacttcggagttttagccatattttttcctctttgtatcttaaaaaatag 19394976  T
Q  100 taaatgacttgatctctttatagtgtataa 129  Q
     |||| | ||||||||||||| || |||||    
T  19394977 gaaattatttgatctctttatggtatataa 19395006  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 14320096 - 14320034
Alignment:
Q  67 ccatatttttctctatttgtgtccaaataatagtaaatgacttgatctctttatagtgtataa 129  Q
    |||||| ||||||| ||||| || ||| ||||| | |||||||||||||||||||||||||||    
T  14320096 ccatatatttctctctttgtatctaaacaatagcacatgacttgatctctttatagtgtataa 14320034  T

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