View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16402_low_19 (Length: 256)
Name: NF16402_low_19
Description: NF16402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16402_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 54889643 - 54889398
Alignment:
| Q |
1 |
ctttataacacaggaagcctttttattttaaatgtctctcactgaatcactactttgattcttggttgttgcagttactacaactacgaagcctgtggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54889643 |
ctttataacacaggaagcctttttattttaaatgtctctcactgaatcactactttgattcttggttgttgcagttactacaactacgaaacctgtggaa |
54889544 |
T |
|
| Q |
101 |
gcgctagaattgttgagggaaaaaagagatatgtttgaccttgtaattagtgatgtaagcatgccagaaatggatggattcaagctccttgagcaagttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54889543 |
gcgctagaattgttgagggaaaaaagagatatgtttgaccttgtaattagtgatgtaagcatgccagaaatggatggattcaagctccttgagcaagttg |
54889444 |
T |
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| Q |
201 |
gacttgaaatagacctacccttcatcagtaagctcacatacctttg |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54889443 |
gacttgaaatagacctacccttcatcagtaagctcacatacctttg |
54889398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 54895243 - 54895023
Alignment:
| Q |
24 |
tattttaaatgtctctcactgaatcactactttgattcttggttgttgcagttactacaactacgaagcctgtggaagcgctagaattgttgagggaaaa |
123 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
54895243 |
tattttaaatatctctcactgaatcactactttgattcttggttgttgcagttactacaactacgaagtcagtggaagcgcttgaattgttgagggaaaa |
54895144 |
T |
|
| Q |
124 |
aagagatatgtttgaccttgtaattagtgatgtaagcatgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacccttc |
223 |
Q |
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| T |
54895143 |
gagaagcatgtttgatcttataattagtgatgtaaacatgccagaaatggatggtttcaagctccttgagcaagttggacttgagatggacctgcctttc |
54895044 |
T |
|
| Q |
224 |
atcagtaagctcacatacctt |
244 |
Q |
| |
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|| |||||||| ||| ||||| |
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| T |
54895043 |
attagtaagctaacaaacctt |
54895023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 38 - 246
Target Start/End: Complemental strand, 54905655 - 54905447
Alignment:
| Q |
38 |
ctcactgaatcactactttgattcttggttgttgcagttactacaactacgaagcctgtggaagcgctagaattgttgagggaaaaaagagatatgtttg |
137 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | |||||||||| |
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| T |
54905655 |
ctcactaaatcactagcttgattcttggttgttgcagttactacaactacgaaacctgtggaagcgctagaattgttgagagaaaagaaggatatgtttg |
54905556 |
T |
|
| Q |
138 |
accttgtaattagtgatgtaagcatgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacccttcatcagtaagctcac |
237 |
Q |
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|||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| |
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| T |
54905555 |
acctagtaattagtgatgttagcatgccagacatggatggcttcaagctccttgagcaagttggacttgaaatggatttacctttcatcagtaagctcac |
54905456 |
T |
|
| Q |
238 |
atacctttg |
246 |
Q |
| |
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| ||||||| |
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| T |
54905455 |
acacctttg |
54905447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 49061287 - 49061166
Alignment:
| Q |
111 |
tgttgagggaaaaaagagatatgtttgaccttgtaattagtgatgtaagcatgccagaaatggatggattcaagctccttgagcaagttggacttgaaat |
210 |
Q |
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||||||| ||||| | ||| | ||||||||| ||||| ||||||||| |||||| || ||||||||||| ||||| ||||| | || ||||||||||| |
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| T |
49061287 |
tgttgagagaaaacaaagacaagtttgacctggtaatcagtgatgtacacatgccggacatggatggatttaagctgcttgaacttgtgggacttgaaat |
49061188 |
T |
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| Q |
211 |
agacctacccttcatcagtaag |
232 |
Q |
| |
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||||| ||| |||| |||||| |
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| T |
49061187 |
ggaccttcccgtcataagtaag |
49061166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 2904663 - 2904734
Alignment:
| Q |
161 |
atgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacccttcatcagtaag |
232 |
Q |
| |
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|||||||| ||||||||||| ||||| ||||||| ||||||||||| || |||||||| ||||||||||| |
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| T |
2904663 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcatcagtaag |
2904734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 2893155 - 2893226
Alignment:
| Q |
161 |
atgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacccttcatcagtaag |
232 |
Q |
| |
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|||||||| ||||| ||||| ||||| ||||||| ||||||||||| || |||||||| ||||||||||| |
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| T |
2893155 |
atgccagacatggacggatttaagcttcttgagcttgttggacttgagatggacctacctgtcatcagtaag |
2893226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 48870519 - 48870461
Alignment:
| Q |
161 |
atgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacc |
219 |
Q |
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|||||||| ||||||||||| ||||| ||||||| ||||||||||| || |||||||| |
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| T |
48870519 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacc |
48870461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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