View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16402_low_2 (Length: 485)

Name: NF16402_low_2
Description: NF16402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16402_low_2
NF16402_low_2
[»] chr4 (3 HSPs)
chr4 (19-246)||(43288470-43288697)
chr4 (298-474)||(43288299-43288476)
chr4 (263-319)||(44643596-44643652)
[»] chr1 (7 HSPs)
chr1 (263-322)||(12141569-12141628)
chr1 (263-319)||(1953812-1953868)
chr1 (18-77)||(49390119-49390178)
chr1 (263-307)||(26310463-26310507)
chr1 (262-319)||(4242485-4242542)
chr1 (263-319)||(51465629-51465683)
chr1 (271-319)||(47580540-47580588)
[»] chr8 (5 HSPs)
chr8 (263-319)||(31183840-31183896)
chr8 (263-319)||(39655614-39655670)
chr8 (264-311)||(21347255-21347302)
chr8 (283-312)||(17028506-17028535)
chr8 (283-312)||(17558942-17558971)
[»] chr3 (1 HSPs)
chr3 (263-319)||(11634084-11634140)
[»] chr7 (3 HSPs)
chr7 (186-259)||(31209759-31209829)
chr7 (18-77)||(13816614-13816673)
chr7 (263-319)||(39426369-39426424)
[»] chr6 (3 HSPs)
chr6 (18-77)||(24044138-24044197)
chr6 (263-304)||(6591767-6591808)
chr6 (263-309)||(19976203-19976249)
[»] chr2 (3 HSPs)
chr2 (18-77)||(10940637-10940696)
chr2 (18-77)||(10946506-10946565)
chr2 (282-319)||(14433535-14433572)
[»] chr5 (2 HSPs)
chr5 (283-319)||(26702954-26702990)
chr5 (283-319)||(26972687-26972723)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 43288697 - 43288470
Alignment:
Q  19 gaatgtgtacctgaccccttgtgcatgatttcaaggggagaaaagtttaaaacttacaaaggtttccatgctctgattctttcataccataattgaaata 118  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43288697 gaatgtgtacctgaccccttgtggatgattccaaggggagaaaagtttaaaacttacaaaggtttccatgctctgattctttcataccataattgaaata 43288598  T
Q  119 gacatattagaatattctaccgacatcagtgaacgctatctccctggttccggttaacacaatctataagcttctctttaacatgctcactttcagtcaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43288597 gacatattagaatattctaccgacatcagtgaacgctatctccctggttccggttaacacaatctataagcttctctttaacatgctcactttcagtcaa 43288498  T
Q  219 tttcttatacatttctccatccacaaat 246  Q
    ||||||||||||||||||||||||||||    
T  43288497 tttcttatacatttctccatccacaaat 43288470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 298 - 474
Target Start/End: Complemental strand, 43288476 - 43288299
Alignment:
Q  298 cacaaatcaaattagaagaaacatggagattgataatcttctgtcccttgtgtattgctcaaagcaatatatatgttggcttatttagtagaaccagagt 397  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43288476 cacaaatcaaattagaagaaacatgcagattgataatcttctgtcccttgtgtattgctcaaagcaatatatatgttggcttatttagtagaaccagagt 43288377  T
Q  398 tgccactcct-agtgagtttaaagcagttaatttttacgcctttaattttctattggtctttgtacccttttgcctat 474  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  43288376 tgccactcatcagtgagtttaaagcagttaatttttacgcctttaatttgctattggcctttgtacccttttgcctat 43288299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 44643652 - 44643596
Alignment:
Q  263 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 319  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  44643652 gaatttggttgccgacaaagctccatcaaaatcttcacaaatcaaattagaagaaac 44643596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 12141569 - 12141628
Alignment:
Q  263 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaacatg 322  Q
    |||||||||||| |||||| || |||||||||||||||||||||||||| ||||||||||    
T  12141569 gaatttggttgccgacacatcttcatcaaaatcttcacaaatcaaattaaaagaaacatg 12141628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 1953868 - 1953812
Alignment:
Q  263 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 319  Q
    |||||||||||| |||||||| |||||||||||||||||||||||| |||| |||||    
T  1953868 gaatttggttgccgacacagccccatcaaaatcttcacaaatcaaagtagaggaaac 1953812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 49390119 - 49390178
Alignment:
Q  18 agaatgtgtacctgaccccttgtgcatgatttcaaggggagaaaagtttaaaacttacaa 77  Q
    |||||||||||||||||||||||| |||||||||| ||||||   |||||||||||||||    
T  49390119 agaatgtgtacctgaccccttgtggatgatttcaaagggagacgtgtttaaaacttacaa 49390178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 26310507 - 26310463
Alignment:
Q  263 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaa 307  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||    
T  26310507 gaatttggttgttgacacagctccatcaaaatcgtcacaaatcaa 26310463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 4242485 - 4242542
Alignment:
Q  262 tgaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 319  Q
    ||||||||||||  |||||| |||||||||||||||| ||||||||||| || |||||    
T  4242485 tgaatttggttgtcgacacaactccatcaaaatcttcgcaaatcaaattggaggaaac 4242542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 51465683 - 51465629
Alignment:
Q  263 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 319  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||| |||| |||||    
T  51465683 gaatttggttgccgacacagctccatc--aatcttcacaaatcaaagtagaggaaac 51465629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 47580588 - 47580540
Alignment:
Q  271 ttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 319  Q
    |||| |||||||||||||| ||||||| |||||||||| |||| |||||    
T  47580588 ttgccgacacagctccatcgaaatcttaacaaatcaaagtagaggaaac 47580540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 31183896 - 31183840
Alignment:
Q  263 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 319  Q
    |||||||||||  |||||||||||||||||||||||| ||||||| |||||||||||    
T  31183896 gaatttggttgtagacacagctccatcaaaatcttcataaatcaacttagaagaaac 31183840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 39655614 - 39655670
Alignment:
Q  263 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 319  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||    
T  39655614 gaatttgattgccgacacagctccatcaaaatcttcacaaatcaaattggaggaaac 39655670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 21347302 - 21347255
Alignment:
Q  264 aatttggttgctgacacagctccatcaaaatcttcacaaatcaaatta 311  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||||    
T  21347302 aatttggttgtcgacacagctctatcaaaatcttcacaaatcaaatta 21347255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 312
Target Start/End: Complemental strand, 17028535 - 17028506
Alignment:
Q  283 ctccatcaaaatcttcacaaatcaaattag 312  Q
    ||||||||||||||||||||||||||||||    
T  17028535 ctccatcaaaatcttcacaaatcaaattag 17028506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 312
Target Start/End: Complemental strand, 17558971 - 17558942
Alignment:
Q  283 ctccatcaaaatcttcacaaatcaaattag 312  Q
    ||||||||||||||||||||||||||||||    
T  17558971 ctccatcaaaatcttcacaaatcaaattag 17558942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 11634084 - 11634140
Alignment:
Q  263 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 319  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||    
T  11634084 gaatttgattgcagacacagcttcatcaaaatcttcacaaatcaaattagaggaaac 11634140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 31209759 - 31209829
Alignment:
Q  186 aagcttctctttaacatgctcactttcagtcaatttcttatacatttctccatccacaaatatgacatagcagc 259  Q
    |||||||||||| ||||||| | |||||| |||||||||||||||   |||||||||| |||||||||||||||    
T  31209759 aagcttctctttgacatgcttaatttcagccaatttcttatacat---tccatccacagatatgacatagcagc 31209829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 13816673 - 13816614
Alignment:
Q  18 agaatgtgtacctgaccccttgtgcatgatttcaaggggagaaaagtttaaaacttacaa 77  Q
    |||||||||||||||||| ||||| |||||||||| ||||||   |||||||||||||||    
T  13816673 agaatgtgtacctgacccattgtggatgatttcaaagggagacgtgtttaaaacttacaa 13816614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 39426369 - 39426424
Alignment:
Q  263 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 319  Q
    |||||||||||| |||||| | |||||||||| ||||||||||||| |||| |||||    
T  39426369 gaatttggttgcggacacaac-ccatcaaaattttcacaaatcaaagtagaggaaac 39426424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 24044138 - 24044197
Alignment:
Q  18 agaatgtgtacctgaccccttgtgcatgatttcaaggggagaaaagtttaaaacttacaa 77  Q
    |||||||||||||||||||||||| |||||||||| ||||||   |||||||||||||||    
T  24044138 agaatgtgtacctgaccccttgtggatgatttcaaagggagacgtgtttaaaacttacaa 24044197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 6591767 - 6591808
Alignment:
Q  263 gaatttggttgctgacacagctccatcaaaatcttcacaaat 304  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  6591767 gaatttggttgccgacacagctccatcaaaatcttcacaaat 6591808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 19976249 - 19976203
Alignment:
Q  263 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaat 309  Q
    |||||| ||||| |||| | |||||||||||||||||||||||||||    
T  19976249 gaattttgttgccgacaaaactccatcaaaatcttcacaaatcaaat 19976203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 10940637 - 10940696
Alignment:
Q  18 agaatgtgtacctgaccccttgtgcatgatttcaaggggagaaaagtttaaaacttacaa 77  Q
    |||||||||||||||||||||||| |||||||||| ||||||   |||||||||||||||    
T  10940637 agaatgtgtacctgaccccttgtggatgatttcaaagggagacgtgtttaaaacttacaa 10940696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 10946506 - 10946565
Alignment:
Q  18 agaatgtgtacctgaccccttgtgcatgatttcaaggggagaaaagtttaaaacttacaa 77  Q
    |||||||||||||||||||||||| |||||||||| ||||||   |||||||||||||||    
T  10946506 agaatgtgtacctgaccccttgtggatgatttcaaagggagacgtgtttaaaacttacaa 10946565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 14433535 - 14433572
Alignment:
Q  282 gctccatcaaaatcttcacaaatcaaattagaagaaac 319  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  14433535 gctccatcaaaatcttcacaaattaaattagaagaaac 14433572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 26702954 - 26702990
Alignment:
Q  283 ctccatcaaaatcttcacaaatcaaattagaagaaac 319  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  26702954 ctccatcaaaaccttcacaaatcaaattagaggaaac 26702990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 26972687 - 26972723
Alignment:
Q  283 ctccatcaaaatcttcacaaatcaaattagaagaaac 319  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  26972687 ctccatcaaaaccttcacaaatcaaattagaggaaac 26972723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University