View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16402_low_20 (Length: 252)
Name: NF16402_low_20
Description: NF16402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16402_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 34344321 - 34344082
Alignment:
| Q |
1 |
agagtacagaccatttgtttactttttcactcctttattccttaannnnnnnnnnnnnattgaaacaaatacccaccacacacgttatctttccttcann |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
34344321 |
agagtacagaccatttgtttactttttcactattttattgcttaatttttatttttttattgaaacaaatatccacaacacacgttatctttccttcatt |
34344222 |
T |
|
| Q |
101 |
nnnnnn-ggattcattgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34344221 |
tttttttggattcattgatttggtggaccatacaaatacacacattagaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtc |
34344122 |
T |
|
| Q |
200 |
caaaactcataaagcttaccattcttccttcttccttctt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34344121 |
caaaactcataaagcttaccattcttccttcttccttctt |
34344082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 18913128 - 18913197
Alignment:
| Q |
113 |
attgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaaag |
182 |
Q |
| |
|
||||| |||||||||| |||||||||||| || |||| || | ||||| |||||||||||||||||||| |
|
|
| T |
18913128 |
attgagttggtggaccttacaaatacacatatcacaaccttatcttttaccacttgttatctctccaaag |
18913197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 59 - 232
Target Start/End: Complemental strand, 3017979 - 3017805
Alignment:
| Q |
59 |
attgaaacaaatacccaccacacacgttatctttccttcannnnnnnng-gattcattgatttggtggaccatacaaatacacacatttcaacattttat |
157 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3017979 |
attgaaacaaatacccaccacacacattatctttccttcattttttttttgattcattgatttggtggaccatacaaatacacacattacaacattttat |
3017880 |
T |
|
| Q |
158 |
tttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttctt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3017879 |
tttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttctt |
3017805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 37278612 - 37278739
Alignment:
| Q |
112 |
cattgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataa |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37278612 |
cattgatttggtggatcatacaaatacacacattacaacattttcttttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataa |
37278711 |
T |
|
| Q |
212 |
agcttaccattcttccttcttccttctt |
239 |
Q |
| |
|
||||| |||||||||||| ||||||||| |
|
|
| T |
37278712 |
agcttgccattcttcctttttccttctt |
37278739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 46420229 - 46420331
Alignment:
| Q |
137 |
acacacatttcaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt |
236 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46420229 |
acacacattacaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt |
46420328 |
T |
|
| Q |
237 |
ctt |
239 |
Q |
| |
|
||| |
|
|
| T |
46420329 |
ctt |
46420331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46420152 - 46420196
Alignment:
| Q |
1 |
agagtacagaccatttgtttactttttcactcctttattccttaa |
45 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46420152 |
agagtacataccatttgtttactttttcactcctttattgcttaa |
46420196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University