View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16402_low_24 (Length: 248)
Name: NF16402_low_24
Description: NF16402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16402_low_24 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 2591309 - 2591093
Alignment:
| Q |
12 |
acctgtgtaagtgttgaaaaatgaatttaatagagatgcacattattaatgtaaaatagttttacatcgtcatccatcgagaactcatgatattatcatg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2591309 |
acctgtgtaagtgttgaaaaatgaatttaatagagatgcacattattaatgtaaaatagttttacatcgtcatccattgagaactcatgatattatcatg |
2591210 |
T |
|
| Q |
112 |
taagctttccctgtaatcactacttaaaagttcaacttttatatttgaactacctttaactttatacacttattcgacactttattttctctctatttat |
211 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
2591209 |
taagctttccctgtaatcactatttaaaagttcaacttttatatttgaactacctttaactttatacacttattcgacactttattttctttctatttgt |
2591110 |
T |
|
| Q |
212 |
ctcttcctatcacatca |
228 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
2591109 |
ctcttcatatcacatca |
2591093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 2622855 - 2622761
Alignment:
| Q |
12 |
acctgtgtaagtgttgaaaaatgaatttaatagagatgcacattattaatgtaaaatagttttacatcgtcatccatcgagaactcatgatatta |
106 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||||| ||||||| ||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
2622855 |
acctgtgtaagtgttaaaaatagaatttaatatggatgcacactattaatataaaatagttttatgtcgtcgtccattgagaactcatgatatta |
2622761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 2622760 - 2622696
Alignment:
| Q |
152 |
atatttgaactacctttaactttatacacttattcgacactttattttctctctatttatctctt |
216 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| ||||||| |||||| ||||| | |||||| |
|
|
| T |
2622760 |
atatttgaacaccctttaactttatacacctattcaacactttcttttctatctatatttctctt |
2622696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 36291266 - 36291307
Alignment:
| Q |
188 |
acactttattttctctctatttatctcttcctatcacatcat |
229 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36291266 |
acacattattttctttctatttatctcttcctatcacatcat |
36291307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 228
Target Start/End: Complemental strand, 37780650 - 37780615
Alignment:
| Q |
193 |
ttattttctctctatttatctcttcctatcacatca |
228 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37780650 |
ttattttctctctatttgtctcttcctatcacatca |
37780615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University