View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16402_low_28 (Length: 222)
Name: NF16402_low_28
Description: NF16402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16402_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 20851195 - 20851385
Alignment:
| Q |
10 |
agaagcaaaggaacacaacacaagtcaaaacggacattatgtgtagaaaataattacaatcagccatatatatataatacacaaaagagggaaaaacaaa |
109 |
Q |
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| T |
20851195 |
agaaacaagggaacaccacacaagtcaaaacggacattatgtgtagaaaataattacaatcagccatatatatataatacacaaaagagggaaaaacaaa |
20851294 |
T |
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| Q |
110 |
tgatattgatcctccacagctgcagcgaacctctcttttctctttcaaaacatgatagagtgagaggcaagagaaaagtctttgcattgtc |
200 |
Q |
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| T |
20851295 |
tgatattgatcctccaccgctgcagcgaacctctcttttctctttcaaaacatgatagagtgagaggcaagagaaaagtctttgcattgtc |
20851385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 40998785 - 40998913
Alignment:
| Q |
10 |
agaagcaaaggaacacaacacaagtcaaaacggacattatgtgtagaaaataattacaatcagcc--atatatatataatacacaaaagagggaaaaaca |
107 |
Q |
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| T |
40998785 |
agaaacaagggaacacaaaacaagtcaaaacggacattatgtgtagaaaataattacaatcagccatatatatatataatacacaaaagagggaaaaaca |
40998884 |
T |
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| Q |
108 |
aatgatattgatcctccacagctgcagcg |
136 |
Q |
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| T |
40998885 |
aatgatattgatcctccacagctgcagcg |
40998913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 40998952 - 40999023
Alignment:
| Q |
134 |
gcgaacctctcttttctctttcaaaa-----catgatagagtgagaggcaagagaaaagtctttgcattgtc |
200 |
Q |
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| T |
40998952 |
gcgaacctctcttttctctttcaaaattaaacatgatagagtgagaggcaagagaaaagtctttgcattgtc |
40999023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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