View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16402_low_3 (Length: 468)
Name: NF16402_low_3
Description: NF16402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16402_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 9 - 458
Target Start/End: Original strand, 1516007 - 1516456
Alignment:
| Q |
9 |
gaagaaaataagcagctggaacatgatgcaaaggttaaaactctttctagttgaagatataatttttacttctttcctattttcttatatctccaattct |
108 |
Q |
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| T |
1516007 |
gaagcaaataagcagctggaacatgatgcaaaggtttaaactctttctagttgaagatataatttttacttctttcctattttcttatatctccaattct |
1516106 |
T |
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| Q |
109 |
nnnnnnntgtaggaacatccagagaaatatgatattgaagggctgactggaaatgaatctgaagttattgaaatggtcagtcaatgttttatctttcttt |
208 |
Q |
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| T |
1516107 |
aaaaaaatgtaggaacatccagagaaatatgatattgaagggctaactggaaatgaatctgaagttattgaaatggtcagtcaacgttttatctttcttt |
1516206 |
T |
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| Q |
209 |
gcatatcaataatccttctacttgtgtgtttatgtcatattacttgcttgcaaatagtggaatattaaattatattttttcgattacgtttcctggcagg |
308 |
Q |
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| T |
1516207 |
gcatatcaataatccttctacttgtgtgtttatgtcatattacttgcttgcaaatagtggaatattaaattatattttttcgattacgtttcctggcagg |
1516306 |
T |
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| Q |
309 |
atttgatgcttggtgttgccgatcttaatacacctgaggctgttgctgctgcagagtcagctatttccaattctcagcctgtgatttcattggctgctga |
408 |
Q |
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| T |
1516307 |
atttgatgcttggtgttgccgatcttaatacacctgaggctgttgctgctgcagagtcagctatttccaattctcagcctgtgatttcattggctgctga |
1516406 |
T |
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| Q |
409 |
cgatgatagtgaaacagattcagaagaagaaagtagcactgatgatgatg |
458 |
Q |
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| T |
1516407 |
cgatgatagtgaaacagattcagaagaagaaagtagcactgatgatgatg |
1516456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 301 - 455
Target Start/End: Complemental strand, 36613686 - 36613535
Alignment:
| Q |
301 |
ctggcaggatttgatgcttggtgttgccgatcttaatacacctgaggctgttgctgctgcagagtcagctatttccaattctcagcctgtgatttcattg |
400 |
Q |
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| T |
36613686 |
ctggcaggatttgatgcttggtgttgctgatcttcatacaccagaggctgtggcagctgcagagtcagctgtttccagttgtcagcctgtgatttcattg |
36613587 |
T |
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| Q |
401 |
gctgctgacgatgatagtgaaacagattcagaagaagaaagtagcactgatgatg |
455 |
Q |
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| T |
36613586 |
gctgct---gatgatagtgaaatagattcagaagaagaaagtggcgccgatgatg |
36613535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 36613853 - 36613768
Alignment:
| Q |
116 |
tgtaggaacatccagagaaatatgatattgaagggctgactggaaatgaatctgaagttattgaaatggtcagtcaatgttttatc |
201 |
Q |
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| T |
36613853 |
tgtaggaccatccagagaaatatgattttgaagagctaacgggaaatgaatccgaagttattgaaatggttagtcaatgttctatc |
36613768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 36613979 - 36613909
Alignment:
| Q |
9 |
gaagaaaataagcagctggaacatgatgcaaaggttaaaact--ctttctagttgaagatataatttttac |
77 |
Q |
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| T |
36613979 |
gaagcaaataagcggttggagcatgatgcaaaggttaaagcttgatttctaattgaagatataatttttac |
36613909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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