View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16402_low_8 (Length: 381)
Name: NF16402_low_8
Description: NF16402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16402_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 10344595 - 10344238
Alignment:
| Q |
18 |
tttccgacccttatctcaaatacattttcttcaaaaccttttatttctcaagacattttctaatattaaactacaaaatatattccggagtcaacaacat |
117 |
Q |
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| T |
10344595 |
tttccgacccttatctcaaatacattttcttcaaaaccttttatttctcaagccattttctaatattaaactacaaaatattttccggagtcaacgacat |
10344496 |
T |
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| Q |
118 |
aaccacaaaatcctcgttttcagaacattttttgttttatataacttctcaaaatactttcaaacttaactagctagttcaaatattttcaaatgctttg |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10344495 |
aaccaccaaatcctcgttttcagaacattttttgttttgtaaaacttctcaaaatactttcaaacttaactagctagttcaaatattttcaaatgctttg |
10344396 |
T |
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| Q |
218 |
acgat--agagtaaaataggacnnnnnnncaaactatttttaaagatatttccgtcaaaccgtatcaaagaaaatgcattgggtaatatctatgagataa |
315 |
Q |
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| T |
10344395 |
acgatagagagtaaaataggactttttttcaaactatttttaaagatatttccgtcaaaccgtatcaaagaaaatgcattgggtaatatctttgagataa |
10344296 |
T |
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| Q |
316 |
tcagaaactatatcaagtgataacaagcaacattacaacacatcagcttcccaccttt |
373 |
Q |
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| T |
10344295 |
tcaaaaactatatcaagtgataacaagcaacattacaacacatcagcttcccaccttt |
10344238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 10346553 - 10346435
Alignment:
| Q |
23 |
gacccttatctcaaatacattttcttcaaaaccttttatttctcaagacattttctaatattaa--actacaaaatatattccggagtcaacaacataac |
120 |
Q |
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| T |
10346553 |
gacccttatctcaaatacattttcttcaaaaccttttatttgtctagatattttctaatattaaggtttacaaaatattttctagagttaacgacataac |
10346454 |
T |
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| Q |
121 |
cacaaaatcctcgttttca |
139 |
Q |
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| T |
10346453 |
cacaaaatcctcgttttca |
10346435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 10346413 - 10346368
Alignment:
| Q |
145 |
ttttttgttttatataacttctcaaaatactttcaaacttaactag |
190 |
Q |
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||||||||||| || |||||||||| | |||||||||||||||||| |
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| T |
10346413 |
ttttttgttttgtaaaacttctcaatacactttcaaacttaactag |
10346368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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