View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16403_high_4 (Length: 277)
Name: NF16403_high_4
Description: NF16403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16403_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 49563571 - 49563317
Alignment:
| Q |
14 |
aatatcagtagcgcctcctcagacgctgagggaacactgccaccgcctccaaatgattcactgccaccgtctcagagctcttctcaactccccaaaatgt |
113 |
Q |
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| T |
49563571 |
aatatcagtagcgcctc---agacgctgaggtaacactgccaccgcctccaaatgattcactgccaccgtctcagagctcttctcaactccccaaaatgt |
49563475 |
T |
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| Q |
114 |
------------cttcatctacatccacgccgctctctcaacaaccttttcttctccaccgccatttcagattcagatcaaccatctttcacagtttcct |
201 |
Q |
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| T |
49563474 |
tgttgttacctccttcatctacatccacgccgctctctcaacaaccttttcttctccaccgccatttcagattcagatcaaccatctttcacagtttcct |
49563375 |
T |
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| Q |
202 |
acctcaccaacaatttcggcttatcttcacaagatgctctcaaagcatctaaacgact |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49563374 |
acctcaccaacaatttcggcttatcttcacaagatgctctcaaagcatctaaacgact |
49563317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 49904025 - 49904113
Alignment:
| Q |
171 |
gattcagatcaaccatctttcacagtttcctacctcaccaacaatttcggcttatcttcacaagatgctctcaaagcatctaaacgact |
259 |
Q |
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||||||||||||| |||||| |||||||||||||||||||||||| || |||||| |||||||||||||||||||||| |||||||| |
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| T |
49904025 |
gattcagatcaacactctttcccagtttcctacctcaccaacaattgcgctttatctccacaagatgctctcaaagcatccaaacgact |
49904113 |
T |
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