View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16403_low_1 (Length: 495)
Name: NF16403_low_1
Description: NF16403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16403_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 234 - 473
Target Start/End: Complemental strand, 2798032 - 2797795
Alignment:
| Q |
234 |
ttgattacatttattctggtgatgttattatacatcttgataatgatttttcagtttttaacaatagaagccgtaaattcttctatagaaaggtttgcta |
333 |
Q |
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| T |
2798032 |
ttgattacatttattctggtgatgttattatacatcttgataatgatttttcagtttttaacaatagaagccgtaaattcttctatagaaaggtttgcta |
2797933 |
T |
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| Q |
334 |
aattgtcaattttggaatattacaatgtaaccaatttcttttcttggaacatcataatctgaagataaattccctttaataaaatcaatcatataactgg |
433 |
Q |
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| T |
2797932 |
aattgtcaattttggaatattacaatgtaaccaatttcttttcttggaacatcataatctgaagataaattacctttaat--aatcaatcatatcactgg |
2797835 |
T |
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| Q |
434 |
ataaggaattttttaattcgataaatatcaagctgtaaaa |
473 |
Q |
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| T |
2797834 |
ataaggaattttttaattcgataaatatcaagctgtaaaa |
2797795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 234 - 473
Target Start/End: Complemental strand, 2804208 - 2803971
Alignment:
| Q |
234 |
ttgattacatttattctggtgatgttattatacatcttgataatgatttttcagtttttaacaatagaagccgtaaattcttctatagaaaggtttgcta |
333 |
Q |
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| T |
2804208 |
ttgattacatttattctggtgatgttattatacatcttgataatgatttttcagtttttaacaatagaagccgtaaattcttctatagaaaggtttgcta |
2804109 |
T |
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| Q |
334 |
aattgtcaattttggaatattacaatgtaaccaatttcttttcttggaacatcataatctgaagataaattccctttaataaaatcaatcatataactgg |
433 |
Q |
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| T |
2804108 |
aattgtcaattttggaatattacaatgtaaccaatttcttttcttggaacatcataatctgaagataaattacctttaat--aatcaatcatatcactgg |
2804011 |
T |
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| Q |
434 |
ataaggaattttttaattcgataaatatcaagctgtaaaa |
473 |
Q |
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| T |
2804010 |
ataaggaattttttaattcgataaatatcaagctgtaaaa |
2803971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 2798233 - 2798176
Alignment:
| Q |
1 |
tactcaaatcgattggtagtcatattttgaaaatattgctattaattaattaatttgg |
58 |
Q |
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| T |
2798233 |
tactcaaaacgattggtagtcatattttgaaaatattgctattaattaattaatttgg |
2798176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 2804402 - 2804345
Alignment:
| Q |
1 |
tactcaaatcgattggtagtcatattttgaaaatattgctattaattaattaatttgg |
58 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2804402 |
tactcaaatcgattggtagtcatattttgaaaattttgctattaattaattaatttgg |
2804345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 2798175 - 2798137
Alignment:
| Q |
101 |
atattctattttcaaacaatgacaacaacccaatgacat |
139 |
Q |
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| T |
2798175 |
atattctattttcaaacaatgacaacaacccaatgacat |
2798137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 2804344 - 2804306
Alignment:
| Q |
101 |
atattctattttcaaacaatgacaacaacccaatgacat |
139 |
Q |
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| T |
2804344 |
atattctattttcaaacaatgacaacaacccaatgacat |
2804306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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